Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15185

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15175 and ABID97_RS15180 overlap by 8 nucleotidesABID97_RS15180 and ABID97_RS15185 overlap by 4 nucleotidesABID97_RS15185 and ABID97_RS15190 overlap by 4 nucleotidesABID97_RS15190 and ABID97_RS15195 are separated by 240 nucleotides ABID97_RS15175: ABID97_RS15175 - phage tail protein I, at 3,145,036 to 3,145,602 _RS15175 ABID97_RS15180: ABID97_RS15180 - baseplate J/gp47 family protein, at 3,145,595 to 3,146,479 _RS15180 ABID97_RS15185: ABID97_RS15185 - GPW/gp25 family protein, at 3,146,476 to 3,146,838 _RS15185 ABID97_RS15190: ABID97_RS15190 - phage baseplate assembly protein V, at 3,146,835 to 3,147,572 _RS15190 ABID97_RS15195: ABID97_RS15195 - AAA family ATPase, at 3,147,813 to 3,149,243 _RS15195 Position (kb) 3146 3147Strain fitness (log2 ratio) -3 -2 -1 0 1at 3146.198 kb on + strand, within ABID97_RS15180at 3146.424 kb on + strandat 3146.723 kb on + strand, within ABID97_RS15185at 3146.724 kb on - strand, within ABID97_RS15185at 3146.724 kb on - strand, within ABID97_RS15185at 3146.724 kb on - strand, within ABID97_RS15185at 3146.758 kb on - strand, within ABID97_RS15185at 3147.180 kb on - strand, within ABID97_RS15190at 3147.634 kb on + strandat 3147.635 kb on - strandat 3147.716 kb on - strandat 3147.787 kb on + strandat 3147.791 kb on + strandat 3147.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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3,146,198 + ABID97_RS15180 0.68 +0.0
3,146,424 + -1.9
3,146,723 + ABID97_RS15185 0.68 -0.8
3,146,724 - ABID97_RS15185 0.68 -2.8
3,146,724 - ABID97_RS15185 0.68 -0.8
3,146,724 - ABID97_RS15185 0.68 -0.4
3,146,758 - ABID97_RS15185 0.78 -0.5
3,147,180 - ABID97_RS15190 0.47 -1.3
3,147,634 + +0.9
3,147,635 - -0.9
3,147,716 - +1.5
3,147,787 + -0.6
3,147,791 + -0.3
3,147,792 - -0.5

Or see this region's nucleotide sequence