Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15175 and ABID97_RS15180 overlap by 8 nucleotides ABID97_RS15180 and ABID97_RS15185 overlap by 4 nucleotides ABID97_RS15185 and ABID97_RS15190 overlap by 4 nucleotides ABID97_RS15190 and ABID97_RS15195 are separated by 240 nucleotides
ABID97_RS15175: ABID97_RS15175 - phage tail protein I, at 3,145,036 to 3,145,602
_RS15175
ABID97_RS15180: ABID97_RS15180 - baseplate J/gp47 family protein, at 3,145,595 to 3,146,479
_RS15180
ABID97_RS15185: ABID97_RS15185 - GPW/gp25 family protein, at 3,146,476 to 3,146,838
_RS15185
ABID97_RS15190: ABID97_RS15190 - phage baseplate assembly protein V, at 3,146,835 to 3,147,572
_RS15190
ABID97_RS15195: ABID97_RS15195 - AAA family ATPase, at 3,147,813 to 3,149,243
_RS15195
Position (kb)
3146
3147 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3146.198 kb on + strand, within ABID97_RS15180 at 3146.424 kb on + strand at 3146.723 kb on + strand, within ABID97_RS15185 at 3146.724 kb on - strand, within ABID97_RS15185 at 3146.724 kb on - strand, within ABID97_RS15185 at 3146.724 kb on - strand, within ABID97_RS15185 at 3146.758 kb on - strand, within ABID97_RS15185 at 3147.180 kb on - strand, within ABID97_RS15190 at 3147.634 kb on + strand at 3147.635 kb on - strand at 3147.716 kb on - strand at 3147.787 kb on + strand at 3147.791 kb on + strand at 3147.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 3,146,198 + ABID97_RS15180 0.68 +0.0 3,146,424 + -1.9 3,146,723 + ABID97_RS15185 0.68 -0.8 3,146,724 - ABID97_RS15185 0.68 -2.8 3,146,724 - ABID97_RS15185 0.68 -0.8 3,146,724 - ABID97_RS15185 0.68 -0.4 3,146,758 - ABID97_RS15185 0.78 -0.5 3,147,180 - ABID97_RS15190 0.47 -1.3 3,147,634 + +0.9 3,147,635 - -0.9 3,147,716 - +1.5 3,147,787 + -0.6 3,147,791 + -0.3 3,147,792 - -0.5
Or see this region's nucleotide sequence