Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS14660 and ABID97_RS14665 overlap by 4 nucleotides ABID97_RS14665 and ABID97_RS14670 overlap by 4 nucleotides
ABID97_RS14660: ABID97_RS14660 - PD-(D/E)XK nuclease family protein, at 3,047,384 to 3,049,969
_RS14660
ABID97_RS14665: ABID97_RS14665 - UvrD-helicase domain-containing protein, at 3,049,966 to 3,053,229
_RS14665
ABID97_RS14670: ABID97_RS14670 - TIGR03862 family flavoprotein, at 3,053,226 to 3,054,464
_RS14670
Position (kb)
3049
3050
3051
3052
3053
3054 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3049.767 kb on + strand at 3050.326 kb on + strand, within ABID97_RS14665 at 3050.542 kb on + strand, within ABID97_RS14665 at 3050.543 kb on - strand, within ABID97_RS14665 at 3050.560 kb on + strand, within ABID97_RS14665 at 3050.560 kb on + strand, within ABID97_RS14665 at 3050.992 kb on + strand, within ABID97_RS14665 at 3050.993 kb on - strand, within ABID97_RS14665 at 3051.236 kb on - strand, within ABID97_RS14665 at 3051.298 kb on + strand, within ABID97_RS14665 at 3051.298 kb on + strand, within ABID97_RS14665 at 3052.537 kb on + strand, within ABID97_RS14665 at 3053.216 kb on + strand at 3053.216 kb on + strand at 3053.315 kb on - strand at 3053.322 kb on + strand at 3053.322 kb on + strand at 3053.323 kb on - strand at 3053.323 kb on - strand at 3053.323 kb on - strand at 3053.323 kb on - strand at 3053.983 kb on - strand, within ABID97_RS14670 at 3053.983 kb on - strand, within ABID97_RS14670
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 3,049,767 + +2.6 3,050,326 + ABID97_RS14665 0.11 +2.9 3,050,542 + ABID97_RS14665 0.18 -0.4 3,050,543 - ABID97_RS14665 0.18 +0.9 3,050,560 + ABID97_RS14665 0.18 +1.3 3,050,560 + ABID97_RS14665 0.18 -0.1 3,050,992 + ABID97_RS14665 0.31 -1.6 3,050,993 - ABID97_RS14665 0.31 -1.4 3,051,236 - ABID97_RS14665 0.39 -0.3 3,051,298 + ABID97_RS14665 0.41 -2.0 3,051,298 + ABID97_RS14665 0.41 -0.7 3,052,537 + ABID97_RS14665 0.79 +0.6 3,053,216 + -0.7 3,053,216 + +0.6 3,053,315 - -0.1 3,053,322 + -1.1 3,053,322 + -0.0 3,053,323 - +0.0 3,053,323 - -0.9 3,053,323 - +2.9 3,053,323 - -0.7 3,053,983 - ABID97_RS14670 0.61 +0.0 3,053,983 - ABID97_RS14670 0.61 -0.2
Or see this region's nucleotide sequence