Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13800

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13785 and ABID97_RS13790 overlap by 7 nucleotidesABID97_RS13790 and ABID97_RS13795 are separated by 163 nucleotidesABID97_RS13795 and ABID97_RS13800 are separated by 52 nucleotidesABID97_RS13800 and ABID97_RS13805 are separated by 174 nucleotidesABID97_RS13805 and ABID97_RS13810 overlap by 4 nucleotides ABID97_RS13785: ABID97_RS13785 - terminase gpA endonuclease subunit, at 2,861,324 to 2,863,444 _RS13785 ABID97_RS13790: ABID97_RS13790 - Mor transcription activator family protein, at 2,863,438 to 2,863,740 _RS13790 ABID97_RS13795: ABID97_RS13795 - hypothetical protein, at 2,863,904 to 2,864,287 _RS13795 ABID97_RS13800: ABID97_RS13800 - hypothetical protein, at 2,864,340 to 2,865,113 _RS13800 ABID97_RS13805: ABID97_RS13805 - hypothetical protein, at 2,865,288 to 2,865,833 _RS13805 ABID97_RS13810: ABID97_RS13810 - phage portal protein, at 2,865,830 to 2,867,377 _RS13810 Position (kb) 2864 2865 2866Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2863.617 kb on + strand, within ABID97_RS13790at 2863.842 kb on + strandat 2863.842 kb on + strandat 2863.843 kb on - strandat 2863.880 kb on + strandat 2863.881 kb on - strandat 2863.881 kb on - strandat 2864.033 kb on + strand, within ABID97_RS13795at 2864.033 kb on + strand, within ABID97_RS13795at 2864.034 kb on - strand, within ABID97_RS13795at 2864.525 kb on - strand, within ABID97_RS13800at 2864.549 kb on + strand, within ABID97_RS13800at 2864.729 kb on - strand, within ABID97_RS13800at 2864.910 kb on - strand, within ABID97_RS13800at 2864.976 kb on - strand, within ABID97_RS13800at 2865.140 kb on + strandat 2865.140 kb on + strandat 2865.191 kb on + strandat 2865.549 kb on + strand, within ABID97_RS13805at 2866.031 kb on + strand, within ABID97_RS13810

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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2,863,617 + ABID97_RS13790 0.59 -1.1
2,863,842 + -0.5
2,863,842 + -1.2
2,863,843 - +0.2
2,863,880 + +0.6
2,863,881 - -0.1
2,863,881 - +2.6
2,864,033 + ABID97_RS13795 0.34 -1.3
2,864,033 + ABID97_RS13795 0.34 -0.1
2,864,034 - ABID97_RS13795 0.34 +1.6
2,864,525 - ABID97_RS13800 0.24 -3.1
2,864,549 + ABID97_RS13800 0.27 -0.2
2,864,729 - ABID97_RS13800 0.50 -0.7
2,864,910 - ABID97_RS13800 0.74 -0.6
2,864,976 - ABID97_RS13800 0.82 -0.3
2,865,140 + +0.6
2,865,140 + +0.1
2,865,191 + +0.1
2,865,549 + ABID97_RS13805 0.48 -0.5
2,866,031 + ABID97_RS13810 0.13 +0.3

Or see this region's nucleotide sequence