Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13785 and ABID97_RS13790 overlap by 7 nucleotides ABID97_RS13790 and ABID97_RS13795 are separated by 163 nucleotides ABID97_RS13795 and ABID97_RS13800 are separated by 52 nucleotides ABID97_RS13800 and ABID97_RS13805 are separated by 174 nucleotides ABID97_RS13805 and ABID97_RS13810 overlap by 4 nucleotides
ABID97_RS13785: ABID97_RS13785 - terminase gpA endonuclease subunit, at 2,861,324 to 2,863,444
_RS13785
ABID97_RS13790: ABID97_RS13790 - Mor transcription activator family protein, at 2,863,438 to 2,863,740
_RS13790
ABID97_RS13795: ABID97_RS13795 - hypothetical protein, at 2,863,904 to 2,864,287
_RS13795
ABID97_RS13800: ABID97_RS13800 - hypothetical protein, at 2,864,340 to 2,865,113
_RS13800
ABID97_RS13805: ABID97_RS13805 - hypothetical protein, at 2,865,288 to 2,865,833
_RS13805
ABID97_RS13810: ABID97_RS13810 - phage portal protein, at 2,865,830 to 2,867,377
_RS13810
Position (kb)
2864
2865
2866 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2863.617 kb on + strand, within ABID97_RS13790 at 2863.842 kb on + strand at 2863.842 kb on + strand at 2863.843 kb on - strand at 2863.880 kb on + strand at 2863.881 kb on - strand at 2863.881 kb on - strand at 2864.033 kb on + strand, within ABID97_RS13795 at 2864.033 kb on + strand, within ABID97_RS13795 at 2864.034 kb on - strand, within ABID97_RS13795 at 2864.525 kb on - strand, within ABID97_RS13800 at 2864.549 kb on + strand, within ABID97_RS13800 at 2864.729 kb on - strand, within ABID97_RS13800 at 2864.910 kb on - strand, within ABID97_RS13800 at 2864.976 kb on - strand, within ABID97_RS13800 at 2865.140 kb on + strand at 2865.140 kb on + strand at 2865.191 kb on + strand at 2865.549 kb on + strand, within ABID97_RS13805 at 2866.031 kb on + strand, within ABID97_RS13810
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 2,863,617 + ABID97_RS13790 0.59 -1.1 2,863,842 + -0.5 2,863,842 + -1.2 2,863,843 - +0.2 2,863,880 + +0.6 2,863,881 - -0.1 2,863,881 - +2.6 2,864,033 + ABID97_RS13795 0.34 -1.3 2,864,033 + ABID97_RS13795 0.34 -0.1 2,864,034 - ABID97_RS13795 0.34 +1.6 2,864,525 - ABID97_RS13800 0.24 -3.1 2,864,549 + ABID97_RS13800 0.27 -0.2 2,864,729 - ABID97_RS13800 0.50 -0.7 2,864,910 - ABID97_RS13800 0.74 -0.6 2,864,976 - ABID97_RS13800 0.82 -0.3 2,865,140 + +0.6 2,865,140 + +0.1 2,865,191 + +0.1 2,865,549 + ABID97_RS13805 0.48 -0.5 2,866,031 + ABID97_RS13810 0.13 +0.3
Or see this region's nucleotide sequence