Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13190

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13180 and ABID97_RS13185 are separated by 5 nucleotidesABID97_RS13185 and ABID97_RS13190 are separated by 36 nucleotidesABID97_RS13190 and ABID97_RS13195 are separated by 135 nucleotides ABID97_RS13180: ABID97_RS13180 - branched-chain amino acid ABC transporter permease, at 2,745,412 to 2,746,401 _RS13180 ABID97_RS13185: ABID97_RS13185 - branched-chain amino acid ABC transporter permease, at 2,746,407 to 2,747,264 _RS13185 ABID97_RS13190: ABID97_RS13190 - ABC transporter substrate-binding protein, at 2,747,301 to 2,748,479 _RS13190 ABID97_RS13195: ABID97_RS13195 - maleylacetate reductase, at 2,748,615 to 2,749,691 _RS13195 Position (kb) 2747 2748 2749Strain fitness (log2 ratio) -1 0 1at 2746.601 kb on - strand, within ABID97_RS13185at 2746.612 kb on + strand, within ABID97_RS13185at 2746.612 kb on + strand, within ABID97_RS13185at 2747.016 kb on + strand, within ABID97_RS13185at 2747.017 kb on - strand, within ABID97_RS13185at 2747.393 kb on - strandat 2747.701 kb on + strand, within ABID97_RS13190at 2747.764 kb on + strand, within ABID97_RS13190at 2747.813 kb on - strand, within ABID97_RS13190at 2748.046 kb on + strand, within ABID97_RS13190at 2748.046 kb on + strand, within ABID97_RS13190at 2748.064 kb on + strand, within ABID97_RS13190at 2748.313 kb on + strand, within ABID97_RS13190at 2748.314 kb on - strand, within ABID97_RS13190at 2749.153 kb on + strand, within ABID97_RS13195at 2749.154 kb on - strand, within ABID97_RS13195at 2749.336 kb on + strand, within ABID97_RS13195

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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2,746,601 - ABID97_RS13185 0.23 -0.4
2,746,612 + ABID97_RS13185 0.24 -0.3
2,746,612 + ABID97_RS13185 0.24 +0.2
2,747,016 + ABID97_RS13185 0.71 -0.9
2,747,017 - ABID97_RS13185 0.71 +0.3
2,747,393 - -0.5
2,747,701 + ABID97_RS13190 0.34 +0.1
2,747,764 + ABID97_RS13190 0.39 +1.4
2,747,813 - ABID97_RS13190 0.43 +0.6
2,748,046 + ABID97_RS13190 0.63 -0.1
2,748,046 + ABID97_RS13190 0.63 +0.5
2,748,064 + ABID97_RS13190 0.65 -0.4
2,748,313 + ABID97_RS13190 0.86 +0.3
2,748,314 - ABID97_RS13190 0.86 +1.3
2,749,153 + ABID97_RS13195 0.50 -0.3
2,749,154 - ABID97_RS13195 0.50 +0.6
2,749,336 + ABID97_RS13195 0.67 -0.9

Or see this region's nucleotide sequence