Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13180 and ABID97_RS13185 are separated by 5 nucleotides ABID97_RS13185 and ABID97_RS13190 are separated by 36 nucleotides ABID97_RS13190 and ABID97_RS13195 are separated by 135 nucleotides
ABID97_RS13180: ABID97_RS13180 - branched-chain amino acid ABC transporter permease, at 2,745,412 to 2,746,401
_RS13180
ABID97_RS13185: ABID97_RS13185 - branched-chain amino acid ABC transporter permease, at 2,746,407 to 2,747,264
_RS13185
ABID97_RS13190: ABID97_RS13190 - ABC transporter substrate-binding protein, at 2,747,301 to 2,748,479
_RS13190
ABID97_RS13195: ABID97_RS13195 - maleylacetate reductase, at 2,748,615 to 2,749,691
_RS13195
Position (kb)
2747
2748
2749 Strain fitness (log2 ratio)
-1
0
1 at 2746.601 kb on - strand, within ABID97_RS13185 at 2746.612 kb on + strand, within ABID97_RS13185 at 2746.612 kb on + strand, within ABID97_RS13185 at 2747.016 kb on + strand, within ABID97_RS13185 at 2747.017 kb on - strand, within ABID97_RS13185 at 2747.393 kb on - strand at 2747.701 kb on + strand, within ABID97_RS13190 at 2747.764 kb on + strand, within ABID97_RS13190 at 2747.813 kb on - strand, within ABID97_RS13190 at 2748.046 kb on + strand, within ABID97_RS13190 at 2748.046 kb on + strand, within ABID97_RS13190 at 2748.064 kb on + strand, within ABID97_RS13190 at 2748.313 kb on + strand, within ABID97_RS13190 at 2748.314 kb on - strand, within ABID97_RS13190 at 2749.153 kb on + strand, within ABID97_RS13195 at 2749.154 kb on - strand, within ABID97_RS13195 at 2749.336 kb on + strand, within ABID97_RS13195
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 2,746,601 - ABID97_RS13185 0.23 -0.4 2,746,612 + ABID97_RS13185 0.24 -0.3 2,746,612 + ABID97_RS13185 0.24 +0.2 2,747,016 + ABID97_RS13185 0.71 -0.9 2,747,017 - ABID97_RS13185 0.71 +0.3 2,747,393 - -0.5 2,747,701 + ABID97_RS13190 0.34 +0.1 2,747,764 + ABID97_RS13190 0.39 +1.4 2,747,813 - ABID97_RS13190 0.43 +0.6 2,748,046 + ABID97_RS13190 0.63 -0.1 2,748,046 + ABID97_RS13190 0.63 +0.5 2,748,064 + ABID97_RS13190 0.65 -0.4 2,748,313 + ABID97_RS13190 0.86 +0.3 2,748,314 - ABID97_RS13190 0.86 +1.3 2,749,153 + ABID97_RS13195 0.50 -0.3 2,749,154 - ABID97_RS13195 0.50 +0.6 2,749,336 + ABID97_RS13195 0.67 -0.9
Or see this region's nucleotide sequence