Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13100 and ABID97_RS13105 are separated by 32 nucleotides ABID97_RS13105 and ABID97_RS13110 are separated by 23 nucleotides
ABID97_RS13100: ABID97_RS13100 - 3-(methylthio)propionyl-CoA ligase, at 2,727,732 to 2,729,360
_RS13100
ABID97_RS13105: ABID97_RS13105 - quinone oxidoreductase, at 2,729,393 to 2,730,364
_RS13105
ABID97_RS13110: ABID97_RS13110 - tripartite tricarboxylate transporter substrate binding protein, at 2,730,388 to 2,731,359
_RS13110
Position (kb)
2729
2730
2731 Strain fitness (log2 ratio)
-1
0
1 at 2728.524 kb on + strand, within ABID97_RS13100 at 2728.768 kb on + strand, within ABID97_RS13100 at 2729.117 kb on - strand, within ABID97_RS13100 at 2729.117 kb on - strand, within ABID97_RS13100 at 2729.565 kb on + strand, within ABID97_RS13105 at 2729.565 kb on + strand, within ABID97_RS13105 at 2729.566 kb on - strand, within ABID97_RS13105 at 2729.728 kb on - strand, within ABID97_RS13105 at 2730.084 kb on + strand, within ABID97_RS13105 at 2730.085 kb on - strand, within ABID97_RS13105 at 2730.228 kb on + strand, within ABID97_RS13105 at 2730.890 kb on + strand, within ABID97_RS13110 at 2730.890 kb on + strand, within ABID97_RS13110 at 2731.127 kb on + strand, within ABID97_RS13110
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 2,728,524 + ABID97_RS13100 0.49 +0.4 2,728,768 + ABID97_RS13100 0.64 -0.1 2,729,117 - ABID97_RS13100 0.85 -0.2 2,729,117 - ABID97_RS13100 0.85 +1.5 2,729,565 + ABID97_RS13105 0.18 -0.1 2,729,565 + ABID97_RS13105 0.18 -1.5 2,729,566 - ABID97_RS13105 0.18 -0.4 2,729,728 - ABID97_RS13105 0.34 -0.2 2,730,084 + ABID97_RS13105 0.71 +0.3 2,730,085 - ABID97_RS13105 0.71 -0.3 2,730,228 + ABID97_RS13105 0.86 -1.7 2,730,890 + ABID97_RS13110 0.52 -0.0 2,730,890 + ABID97_RS13110 0.52 +0.3 2,731,127 + ABID97_RS13110 0.76 +0.1
Or see this region's nucleotide sequence