Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13105

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13100 and ABID97_RS13105 are separated by 32 nucleotidesABID97_RS13105 and ABID97_RS13110 are separated by 23 nucleotides ABID97_RS13100: ABID97_RS13100 - 3-(methylthio)propionyl-CoA ligase, at 2,727,732 to 2,729,360 _RS13100 ABID97_RS13105: ABID97_RS13105 - quinone oxidoreductase, at 2,729,393 to 2,730,364 _RS13105 ABID97_RS13110: ABID97_RS13110 - tripartite tricarboxylate transporter substrate binding protein, at 2,730,388 to 2,731,359 _RS13110 Position (kb) 2729 2730 2731Strain fitness (log2 ratio) -1 0 1at 2728.524 kb on + strand, within ABID97_RS13100at 2728.768 kb on + strand, within ABID97_RS13100at 2729.117 kb on - strand, within ABID97_RS13100at 2729.117 kb on - strand, within ABID97_RS13100at 2729.565 kb on + strand, within ABID97_RS13105at 2729.565 kb on + strand, within ABID97_RS13105at 2729.566 kb on - strand, within ABID97_RS13105at 2729.728 kb on - strand, within ABID97_RS13105at 2730.084 kb on + strand, within ABID97_RS13105at 2730.085 kb on - strand, within ABID97_RS13105at 2730.228 kb on + strand, within ABID97_RS13105at 2730.890 kb on + strand, within ABID97_RS13110at 2730.890 kb on + strand, within ABID97_RS13110at 2731.127 kb on + strand, within ABID97_RS13110

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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2,728,524 + ABID97_RS13100 0.49 +0.4
2,728,768 + ABID97_RS13100 0.64 -0.1
2,729,117 - ABID97_RS13100 0.85 -0.2
2,729,117 - ABID97_RS13100 0.85 +1.5
2,729,565 + ABID97_RS13105 0.18 -0.1
2,729,565 + ABID97_RS13105 0.18 -1.5
2,729,566 - ABID97_RS13105 0.18 -0.4
2,729,728 - ABID97_RS13105 0.34 -0.2
2,730,084 + ABID97_RS13105 0.71 +0.3
2,730,085 - ABID97_RS13105 0.71 -0.3
2,730,228 + ABID97_RS13105 0.86 -1.7
2,730,890 + ABID97_RS13110 0.52 -0.0
2,730,890 + ABID97_RS13110 0.52 +0.3
2,731,127 + ABID97_RS13110 0.76 +0.1

Or see this region's nucleotide sequence