Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12660

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12655 and ABID97_RS12660 overlap by 1 nucleotidesABID97_RS12660 and ABID97_RS12665 overlap by 4 nucleotidesABID97_RS12665 and ABID97_RS12670 are separated by 31 nucleotides ABID97_RS12655: ABID97_RS12655 - formylmethanofuran dehydrogenase subunit A, at 2,626,854 to 2,628,539 _RS12655 ABID97_RS12660: ABID97_RS12660 - formylmethanofuran--tetrahydromethanopterin N-formyltransferase, at 2,628,539 to 2,629,504 _RS12660 ABID97_RS12665: ABID97_RS12665 - formylmethanofuran dehydrogenase subunit C, at 2,629,501 to 2,630,328 _RS12665 ABID97_RS12670: ABID97_RS12670 - formaldehyde-activating enzyme, at 2,630,360 to 2,630,893 _RS12670 Position (kb) 2628 2629 2630Strain fitness (log2 ratio) -2 -1 0 1at 2627.922 kb on + strand, within ABID97_RS12655at 2627.923 kb on - strand, within ABID97_RS12655at 2627.947 kb on + strand, within ABID97_RS12655at 2627.947 kb on + strand, within ABID97_RS12655at 2628.297 kb on + strand, within ABID97_RS12655at 2628.297 kb on + strand, within ABID97_RS12655at 2628.981 kb on - strand, within ABID97_RS12660at 2629.434 kb on - strandat 2629.434 kb on - strandat 2630.049 kb on + strand, within ABID97_RS12665

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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2,627,922 + ABID97_RS12655 0.63 -2.0
2,627,923 - ABID97_RS12655 0.63 +1.0
2,627,947 + ABID97_RS12655 0.65 -0.4
2,627,947 + ABID97_RS12655 0.65 +0.1
2,628,297 + ABID97_RS12655 0.86 +0.5
2,628,297 + ABID97_RS12655 0.86 -0.5
2,628,981 - ABID97_RS12660 0.46 -1.1
2,629,434 - -0.0
2,629,434 - -0.2
2,630,049 + ABID97_RS12665 0.66 -0.8

Or see this region's nucleotide sequence