Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11165 and ABID97_RS11170 are separated by 635 nucleotides ABID97_RS11170 and ABID97_RS11175 are separated by 151 nucleotides ABID97_RS11175 and ABID97_RS11180 are separated by 61 nucleotides
ABID97_RS11165: ABID97_RS11165 - integrase arm-type DNA-binding domain-containing protein, at 2,308,827 to 2,310,077
_RS11165
ABID97_RS11170: ABID97_RS11170 - GntR family transcriptional regulator, at 2,310,713 to 2,311,384
_RS11170
ABID97_RS11175: ABID97_RS11175 - SDR family oxidoreductase, at 2,311,536 to 2,312,264
_RS11175
ABID97_RS11180: ABID97_RS11180 - NAD(P)H-quinone oxidoreductase, at 2,312,326 to 2,313,321
_RS11180
Position (kb)
2310
2311
2312 Strain fitness (log2 ratio)
-2
-1
0
1 at 2309.726 kb on + strand, within ABID97_RS11165 at 2309.726 kb on + strand, within ABID97_RS11165 at 2309.727 kb on - strand, within ABID97_RS11165 at 2309.727 kb on - strand, within ABID97_RS11165 at 2309.727 kb on - strand, within ABID97_RS11165 at 2309.729 kb on + strand, within ABID97_RS11165 at 2309.765 kb on + strand, within ABID97_RS11165 at 2309.765 kb on + strand, within ABID97_RS11165 at 2309.765 kb on + strand, within ABID97_RS11165 at 2309.958 kb on + strand at 2309.959 kb on - strand at 2309.959 kb on - strand at 2309.967 kb on - strand at 2310.015 kb on + strand at 2310.142 kb on + strand at 2310.142 kb on + strand at 2310.142 kb on + strand at 2310.143 kb on - strand at 2310.232 kb on - strand at 2310.305 kb on - strand at 2310.377 kb on - strand at 2310.457 kb on + strand at 2310.495 kb on + strand at 2310.496 kb on - strand at 2310.502 kb on - strand at 2310.508 kb on + strand at 2310.508 kb on + strand at 2310.508 kb on + strand at 2310.509 kb on - strand at 2310.563 kb on + strand at 2310.671 kb on + strand at 2310.672 kb on - strand at 2310.726 kb on + strand at 2310.727 kb on - strand at 2310.850 kb on + strand, within ABID97_RS11170 at 2310.957 kb on + strand, within ABID97_RS11170 at 2310.958 kb on - strand, within ABID97_RS11170 at 2310.958 kb on - strand, within ABID97_RS11170 at 2310.958 kb on - strand, within ABID97_RS11170 at 2311.517 kb on + strand at 2311.530 kb on + strand at 2311.530 kb on + strand at 2311.531 kb on - strand at 2311.531 kb on - strand at 2311.531 kb on - strand at 2311.531 kb on - strand at 2311.541 kb on + strand at 2311.541 kb on + strand at 2311.541 kb on + strand at 2311.541 kb on + strand at 2311.541 kb on + strand at 2311.541 kb on + strand at 2311.542 kb on - strand at 2311.542 kb on - strand at 2311.542 kb on - strand at 2311.542 kb on - strand at 2312.214 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 2,309,726 + ABID97_RS11165 0.72 +0.2 2,309,726 + ABID97_RS11165 0.72 -0.0 2,309,727 - ABID97_RS11165 0.72 -0.2 2,309,727 - ABID97_RS11165 0.72 +0.6 2,309,727 - ABID97_RS11165 0.72 +0.6 2,309,729 + ABID97_RS11165 0.72 +0.1 2,309,765 + ABID97_RS11165 0.75 -0.7 2,309,765 + ABID97_RS11165 0.75 -0.1 2,309,765 + ABID97_RS11165 0.75 -0.8 2,309,958 + -0.9 2,309,959 - +0.3 2,309,959 - -1.1 2,309,967 - -0.8 2,310,015 + +0.7 2,310,142 + +0.1 2,310,142 + +0.4 2,310,142 + +1.0 2,310,143 - +0.3 2,310,232 - +0.2 2,310,305 - -0.4 2,310,377 - -0.4 2,310,457 + +1.1 2,310,495 + +0.0 2,310,496 - +0.3 2,310,502 - -0.2 2,310,508 + +1.3 2,310,508 + +1.2 2,310,508 + -0.2 2,310,509 - -0.6 2,310,563 + -0.5 2,310,671 + +1.5 2,310,672 - +0.7 2,310,726 + -1.0 2,310,727 - -0.4 2,310,850 + ABID97_RS11170 0.20 -0.0 2,310,957 + ABID97_RS11170 0.36 -0.5 2,310,958 - ABID97_RS11170 0.36 +0.3 2,310,958 - ABID97_RS11170 0.36 -1.0 2,310,958 - ABID97_RS11170 0.36 -2.4 2,311,517 + +0.9 2,311,530 + +0.7 2,311,530 + -0.2 2,311,531 - -0.1 2,311,531 - -0.1 2,311,531 - -0.1 2,311,531 - +0.1 2,311,541 + -1.0 2,311,541 + +0.5 2,311,541 + +0.4 2,311,541 + +1.0 2,311,541 + +0.3 2,311,541 + +0.0 2,311,542 - -1.1 2,311,542 - +0.9 2,311,542 - -0.1 2,311,542 - +0.0 2,312,214 + +0.5
Or see this region's nucleotide sequence