Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11170

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11165 and ABID97_RS11170 are separated by 635 nucleotidesABID97_RS11170 and ABID97_RS11175 are separated by 151 nucleotidesABID97_RS11175 and ABID97_RS11180 are separated by 61 nucleotides ABID97_RS11165: ABID97_RS11165 - integrase arm-type DNA-binding domain-containing protein, at 2,308,827 to 2,310,077 _RS11165 ABID97_RS11170: ABID97_RS11170 - GntR family transcriptional regulator, at 2,310,713 to 2,311,384 _RS11170 ABID97_RS11175: ABID97_RS11175 - SDR family oxidoreductase, at 2,311,536 to 2,312,264 _RS11175 ABID97_RS11180: ABID97_RS11180 - NAD(P)H-quinone oxidoreductase, at 2,312,326 to 2,313,321 _RS11180 Position (kb) 2310 2311 2312Strain fitness (log2 ratio) -2 -1 0 1at 2309.726 kb on + strand, within ABID97_RS11165at 2309.726 kb on + strand, within ABID97_RS11165at 2309.727 kb on - strand, within ABID97_RS11165at 2309.727 kb on - strand, within ABID97_RS11165at 2309.727 kb on - strand, within ABID97_RS11165at 2309.729 kb on + strand, within ABID97_RS11165at 2309.765 kb on + strand, within ABID97_RS11165at 2309.765 kb on + strand, within ABID97_RS11165at 2309.765 kb on + strand, within ABID97_RS11165at 2309.958 kb on + strandat 2309.959 kb on - strandat 2309.959 kb on - strandat 2309.967 kb on - strandat 2310.015 kb on + strandat 2310.142 kb on + strandat 2310.142 kb on + strandat 2310.142 kb on + strandat 2310.143 kb on - strandat 2310.232 kb on - strandat 2310.305 kb on - strandat 2310.377 kb on - strandat 2310.457 kb on + strandat 2310.495 kb on + strandat 2310.496 kb on - strandat 2310.502 kb on - strandat 2310.508 kb on + strandat 2310.508 kb on + strandat 2310.508 kb on + strandat 2310.509 kb on - strandat 2310.563 kb on + strandat 2310.671 kb on + strandat 2310.672 kb on - strandat 2310.726 kb on + strandat 2310.727 kb on - strandat 2310.850 kb on + strand, within ABID97_RS11170at 2310.957 kb on + strand, within ABID97_RS11170at 2310.958 kb on - strand, within ABID97_RS11170at 2310.958 kb on - strand, within ABID97_RS11170at 2310.958 kb on - strand, within ABID97_RS11170at 2311.517 kb on + strandat 2311.530 kb on + strandat 2311.530 kb on + strandat 2311.531 kb on - strandat 2311.531 kb on - strandat 2311.531 kb on - strandat 2311.531 kb on - strandat 2311.541 kb on + strandat 2311.541 kb on + strandat 2311.541 kb on + strandat 2311.541 kb on + strandat 2311.541 kb on + strandat 2311.541 kb on + strandat 2311.542 kb on - strandat 2311.542 kb on - strandat 2311.542 kb on - strandat 2311.542 kb on - strandat 2312.214 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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2,309,726 + ABID97_RS11165 0.72 +0.2
2,309,726 + ABID97_RS11165 0.72 -0.0
2,309,727 - ABID97_RS11165 0.72 -0.2
2,309,727 - ABID97_RS11165 0.72 +0.6
2,309,727 - ABID97_RS11165 0.72 +0.6
2,309,729 + ABID97_RS11165 0.72 +0.1
2,309,765 + ABID97_RS11165 0.75 -0.7
2,309,765 + ABID97_RS11165 0.75 -0.1
2,309,765 + ABID97_RS11165 0.75 -0.8
2,309,958 + -0.9
2,309,959 - +0.3
2,309,959 - -1.1
2,309,967 - -0.8
2,310,015 + +0.7
2,310,142 + +0.1
2,310,142 + +0.4
2,310,142 + +1.0
2,310,143 - +0.3
2,310,232 - +0.2
2,310,305 - -0.4
2,310,377 - -0.4
2,310,457 + +1.1
2,310,495 + +0.0
2,310,496 - +0.3
2,310,502 - -0.2
2,310,508 + +1.3
2,310,508 + +1.2
2,310,508 + -0.2
2,310,509 - -0.6
2,310,563 + -0.5
2,310,671 + +1.5
2,310,672 - +0.7
2,310,726 + -1.0
2,310,727 - -0.4
2,310,850 + ABID97_RS11170 0.20 -0.0
2,310,957 + ABID97_RS11170 0.36 -0.5
2,310,958 - ABID97_RS11170 0.36 +0.3
2,310,958 - ABID97_RS11170 0.36 -1.0
2,310,958 - ABID97_RS11170 0.36 -2.4
2,311,517 + +0.9
2,311,530 + +0.7
2,311,530 + -0.2
2,311,531 - -0.1
2,311,531 - -0.1
2,311,531 - -0.1
2,311,531 - +0.1
2,311,541 + -1.0
2,311,541 + +0.5
2,311,541 + +0.4
2,311,541 + +1.0
2,311,541 + +0.3
2,311,541 + +0.0
2,311,542 - -1.1
2,311,542 - +0.9
2,311,542 - -0.1
2,311,542 - +0.0
2,312,214 + +0.5

Or see this region's nucleotide sequence