Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11030

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11020 and ABID97_RS11025 are separated by 49 nucleotidesABID97_RS11025 and ABID97_RS11030 are separated by 14 nucleotidesABID97_RS11030 and ABID97_RS11035 overlap by 4 nucleotidesABID97_RS11035 and ABID97_RS11040 are separated by 32 nucleotides ABID97_RS11020: ABID97_RS11020 - MFS transporter, at 2,281,161 to 2,282,414 _RS11020 ABID97_RS11025: ABID97_RS11025 - sulfite exporter TauE/SafE family protein, at 2,282,464 to 2,283,216 _RS11025 ABID97_RS11030: ABID97_RS11030 - arsenate reductase (glutaredoxin), at 2,283,231 to 2,283,614 _RS11030 ABID97_RS11035: ABID97_RS11035 - glutathione S-transferase family protein, at 2,283,611 to 2,284,285 _RS11035 ABID97_RS11040: ABID97_RS11040 - 6,7-dimethyl-8-ribityllumazine synthase, at 2,284,318 to 2,284,833 _RS11040 Position (kb) 2283 2284Strain fitness (log2 ratio) -1 0 1 2at 2282.238 kb on + strand, within ABID97_RS11020at 2282.238 kb on + strand, within ABID97_RS11020at 2282.238 kb on + strand, within ABID97_RS11020at 2282.239 kb on - strand, within ABID97_RS11020at 2282.239 kb on - strand, within ABID97_RS11020at 2282.308 kb on - strandat 2282.476 kb on + strandat 2282.476 kb on + strandat 2282.477 kb on - strandat 2282.477 kb on - strandat 2282.477 kb on - strandat 2282.477 kb on - strandat 2282.477 kb on - strandat 2282.477 kb on - strandat 2282.477 kb on - strandat 2282.477 kb on - strandat 2282.482 kb on + strandat 2283.106 kb on + strand, within ABID97_RS11025at 2283.106 kb on + strand, within ABID97_RS11025at 2283.107 kb on - strand, within ABID97_RS11025at 2283.490 kb on + strand, within ABID97_RS11030at 2283.640 kb on - strandat 2283.765 kb on + strand, within ABID97_RS11035at 2283.766 kb on - strand, within ABID97_RS11035at 2283.766 kb on - strand, within ABID97_RS11035at 2283.801 kb on + strand, within ABID97_RS11035at 2283.934 kb on - strand, within ABID97_RS11035at 2283.942 kb on + strand, within ABID97_RS11035at 2283.943 kb on - strand, within ABID97_RS11035at 2283.961 kb on - strand, within ABID97_RS11035at 2284.254 kb on + strandat 2284.254 kb on + strandat 2284.254 kb on + strandat 2284.255 kb on - strandat 2284.296 kb on + strandat 2284.550 kb on + strand, within ABID97_RS11040

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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2,282,238 + ABID97_RS11020 0.86 +0.2
2,282,238 + ABID97_RS11020 0.86 +1.9
2,282,238 + ABID97_RS11020 0.86 +0.2
2,282,239 - ABID97_RS11020 0.86 -0.7
2,282,239 - ABID97_RS11020 0.86 -0.8
2,282,308 - +0.1
2,282,476 + -0.4
2,282,476 + -0.0
2,282,477 - -0.5
2,282,477 - -0.0
2,282,477 - -0.2
2,282,477 - -0.1
2,282,477 - -0.0
2,282,477 - -0.2
2,282,477 - -0.0
2,282,477 - -0.4
2,282,482 + +0.1
2,283,106 + ABID97_RS11025 0.85 +0.5
2,283,106 + ABID97_RS11025 0.85 -0.1
2,283,107 - ABID97_RS11025 0.85 +0.5
2,283,490 + ABID97_RS11030 0.67 -1.0
2,283,640 - +0.5
2,283,765 + ABID97_RS11035 0.23 -0.2
2,283,766 - ABID97_RS11035 0.23 +0.5
2,283,766 - ABID97_RS11035 0.23 +0.2
2,283,801 + ABID97_RS11035 0.28 +0.9
2,283,934 - ABID97_RS11035 0.48 -0.2
2,283,942 + ABID97_RS11035 0.49 -0.6
2,283,943 - ABID97_RS11035 0.49 -0.0
2,283,961 - ABID97_RS11035 0.52 +0.4
2,284,254 + +0.6
2,284,254 + -0.0
2,284,254 + +0.4
2,284,255 - +1.3
2,284,296 + +0.3
2,284,550 + ABID97_RS11040 0.45 -0.0

Or see this region's nucleotide sequence