Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11020 and ABID97_RS11025 are separated by 49 nucleotides ABID97_RS11025 and ABID97_RS11030 are separated by 14 nucleotides ABID97_RS11030 and ABID97_RS11035 overlap by 4 nucleotides ABID97_RS11035 and ABID97_RS11040 are separated by 32 nucleotides
ABID97_RS11020: ABID97_RS11020 - MFS transporter, at 2,281,161 to 2,282,414
_RS11020
ABID97_RS11025: ABID97_RS11025 - sulfite exporter TauE/SafE family protein, at 2,282,464 to 2,283,216
_RS11025
ABID97_RS11030: ABID97_RS11030 - arsenate reductase (glutaredoxin), at 2,283,231 to 2,283,614
_RS11030
ABID97_RS11035: ABID97_RS11035 - glutathione S-transferase family protein, at 2,283,611 to 2,284,285
_RS11035
ABID97_RS11040: ABID97_RS11040 - 6,7-dimethyl-8-ribityllumazine synthase, at 2,284,318 to 2,284,833
_RS11040
Position (kb)
2283
2284 Strain fitness (log2 ratio)
-1
0
1
2 at 2282.238 kb on + strand, within ABID97_RS11020 at 2282.238 kb on + strand, within ABID97_RS11020 at 2282.238 kb on + strand, within ABID97_RS11020 at 2282.239 kb on - strand, within ABID97_RS11020 at 2282.239 kb on - strand, within ABID97_RS11020 at 2282.308 kb on - strand at 2282.476 kb on + strand at 2282.476 kb on + strand at 2282.477 kb on - strand at 2282.477 kb on - strand at 2282.477 kb on - strand at 2282.477 kb on - strand at 2282.477 kb on - strand at 2282.477 kb on - strand at 2282.477 kb on - strand at 2282.477 kb on - strand at 2282.482 kb on + strand at 2283.106 kb on + strand, within ABID97_RS11025 at 2283.106 kb on + strand, within ABID97_RS11025 at 2283.107 kb on - strand, within ABID97_RS11025 at 2283.490 kb on + strand, within ABID97_RS11030 at 2283.640 kb on - strand at 2283.765 kb on + strand, within ABID97_RS11035 at 2283.766 kb on - strand, within ABID97_RS11035 at 2283.766 kb on - strand, within ABID97_RS11035 at 2283.801 kb on + strand, within ABID97_RS11035 at 2283.934 kb on - strand, within ABID97_RS11035 at 2283.942 kb on + strand, within ABID97_RS11035 at 2283.943 kb on - strand, within ABID97_RS11035 at 2283.961 kb on - strand, within ABID97_RS11035 at 2284.254 kb on + strand at 2284.254 kb on + strand at 2284.254 kb on + strand at 2284.255 kb on - strand at 2284.296 kb on + strand at 2284.550 kb on + strand, within ABID97_RS11040
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 2,282,238 + ABID97_RS11020 0.86 +0.2 2,282,238 + ABID97_RS11020 0.86 +1.9 2,282,238 + ABID97_RS11020 0.86 +0.2 2,282,239 - ABID97_RS11020 0.86 -0.7 2,282,239 - ABID97_RS11020 0.86 -0.8 2,282,308 - +0.1 2,282,476 + -0.4 2,282,476 + -0.0 2,282,477 - -0.5 2,282,477 - -0.0 2,282,477 - -0.2 2,282,477 - -0.1 2,282,477 - -0.0 2,282,477 - -0.2 2,282,477 - -0.0 2,282,477 - -0.4 2,282,482 + +0.1 2,283,106 + ABID97_RS11025 0.85 +0.5 2,283,106 + ABID97_RS11025 0.85 -0.1 2,283,107 - ABID97_RS11025 0.85 +0.5 2,283,490 + ABID97_RS11030 0.67 -1.0 2,283,640 - +0.5 2,283,765 + ABID97_RS11035 0.23 -0.2 2,283,766 - ABID97_RS11035 0.23 +0.5 2,283,766 - ABID97_RS11035 0.23 +0.2 2,283,801 + ABID97_RS11035 0.28 +0.9 2,283,934 - ABID97_RS11035 0.48 -0.2 2,283,942 + ABID97_RS11035 0.49 -0.6 2,283,943 - ABID97_RS11035 0.49 -0.0 2,283,961 - ABID97_RS11035 0.52 +0.4 2,284,254 + +0.6 2,284,254 + -0.0 2,284,254 + +0.4 2,284,255 - +1.3 2,284,296 + +0.3 2,284,550 + ABID97_RS11040 0.45 -0.0
Or see this region's nucleotide sequence