Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10375

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10365 and ABID97_RS10370 are separated by 40 nucleotidesABID97_RS10370 and ABID97_RS10375 are separated by 25 nucleotidesABID97_RS10375 and ABID97_RS10380 are separated by 88 nucleotides ABID97_RS10365: ABID97_RS10365 - 5-dehydro-4-deoxyglucarate dehydratase, at 2,152,255 to 2,153,166 _RS10365 ABID97_RS10370: ABID97_RS10370 - nuclear transport factor 2 family protein, at 2,153,207 to 2,153,656 _RS10370 ABID97_RS10375: ABID97_RS10375 - glucarate dehydratase, at 2,153,682 to 2,155,040 _RS10375 ABID97_RS10380: ABID97_RS10380 - aldehyde dehydrogenase family protein, at 2,155,129 to 2,156,565 _RS10380 Position (kb) 2153 2154 2155 2156Strain fitness (log2 ratio) -1 0 1at 2152.850 kb on - strand, within ABID97_RS10365at 2152.850 kb on - strand, within ABID97_RS10365at 2152.850 kb on - strand, within ABID97_RS10365at 2152.850 kb on - strand, within ABID97_RS10365at 2152.861 kb on + strand, within ABID97_RS10365at 2152.861 kb on + strand, within ABID97_RS10365at 2152.861 kb on + strand, within ABID97_RS10365at 2152.885 kb on + strand, within ABID97_RS10365at 2152.933 kb on + strand, within ABID97_RS10365at 2152.933 kb on + strand, within ABID97_RS10365at 2153.393 kb on + strand, within ABID97_RS10370at 2153.393 kb on + strand, within ABID97_RS10370at 2153.393 kb on + strand, within ABID97_RS10370at 2153.654 kb on + strandat 2153.655 kb on - strandat 2154.160 kb on - strand, within ABID97_RS10375at 2154.160 kb on - strand, within ABID97_RS10375at 2154.987 kb on + strandat 2154.987 kb on + strandat 2155.047 kb on - strandat 2155.124 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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2,152,850 - ABID97_RS10365 0.65 +0.1
2,152,850 - ABID97_RS10365 0.65 -0.2
2,152,850 - ABID97_RS10365 0.65 +0.9
2,152,850 - ABID97_RS10365 0.65 -0.9
2,152,861 + ABID97_RS10365 0.66 -0.8
2,152,861 + ABID97_RS10365 0.66 +0.3
2,152,861 + ABID97_RS10365 0.66 -0.1
2,152,885 + ABID97_RS10365 0.69 -0.2
2,152,933 + ABID97_RS10365 0.74 +0.1
2,152,933 + ABID97_RS10365 0.74 +0.5
2,153,393 + ABID97_RS10370 0.41 -0.8
2,153,393 + ABID97_RS10370 0.41 -0.4
2,153,393 + ABID97_RS10370 0.41 -0.0
2,153,654 + +0.2
2,153,655 - +0.6
2,154,160 - ABID97_RS10375 0.35 -1.0
2,154,160 - ABID97_RS10375 0.35 -0.6
2,154,987 + -0.3
2,154,987 + -0.0
2,155,047 - -0.7
2,155,124 + +0.3

Or see this region's nucleotide sequence