Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS10365 and ABID97_RS10370 are separated by 40 nucleotides ABID97_RS10370 and ABID97_RS10375 are separated by 25 nucleotides ABID97_RS10375 and ABID97_RS10380 are separated by 88 nucleotides
ABID97_RS10365: ABID97_RS10365 - 5-dehydro-4-deoxyglucarate dehydratase, at 2,152,255 to 2,153,166
_RS10365
ABID97_RS10370: ABID97_RS10370 - nuclear transport factor 2 family protein, at 2,153,207 to 2,153,656
_RS10370
ABID97_RS10375: ABID97_RS10375 - glucarate dehydratase, at 2,153,682 to 2,155,040
_RS10375
ABID97_RS10380: ABID97_RS10380 - aldehyde dehydrogenase family protein, at 2,155,129 to 2,156,565
_RS10380
Position (kb)
2153
2154
2155
2156 Strain fitness (log2 ratio)
-1
0
1 at 2152.850 kb on - strand, within ABID97_RS10365 at 2152.850 kb on - strand, within ABID97_RS10365 at 2152.850 kb on - strand, within ABID97_RS10365 at 2152.850 kb on - strand, within ABID97_RS10365 at 2152.861 kb on + strand, within ABID97_RS10365 at 2152.861 kb on + strand, within ABID97_RS10365 at 2152.861 kb on + strand, within ABID97_RS10365 at 2152.885 kb on + strand, within ABID97_RS10365 at 2152.933 kb on + strand, within ABID97_RS10365 at 2152.933 kb on + strand, within ABID97_RS10365 at 2153.393 kb on + strand, within ABID97_RS10370 at 2153.393 kb on + strand, within ABID97_RS10370 at 2153.393 kb on + strand, within ABID97_RS10370 at 2153.654 kb on + strand at 2153.655 kb on - strand at 2154.160 kb on - strand, within ABID97_RS10375 at 2154.160 kb on - strand, within ABID97_RS10375 at 2154.987 kb on + strand at 2154.987 kb on + strand at 2155.047 kb on - strand at 2155.124 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 2,152,850 - ABID97_RS10365 0.65 +0.1 2,152,850 - ABID97_RS10365 0.65 -0.2 2,152,850 - ABID97_RS10365 0.65 +0.9 2,152,850 - ABID97_RS10365 0.65 -0.9 2,152,861 + ABID97_RS10365 0.66 -0.8 2,152,861 + ABID97_RS10365 0.66 +0.3 2,152,861 + ABID97_RS10365 0.66 -0.1 2,152,885 + ABID97_RS10365 0.69 -0.2 2,152,933 + ABID97_RS10365 0.74 +0.1 2,152,933 + ABID97_RS10365 0.74 +0.5 2,153,393 + ABID97_RS10370 0.41 -0.8 2,153,393 + ABID97_RS10370 0.41 -0.4 2,153,393 + ABID97_RS10370 0.41 -0.0 2,153,654 + +0.2 2,153,655 - +0.6 2,154,160 - ABID97_RS10375 0.35 -1.0 2,154,160 - ABID97_RS10375 0.35 -0.6 2,154,987 + -0.3 2,154,987 + -0.0 2,155,047 - -0.7 2,155,124 + +0.3
Or see this region's nucleotide sequence