Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07910 and ABID97_RS07915 are separated by 13 nucleotides ABID97_RS07915 and ABID97_RS07920 overlap by 4 nucleotides ABID97_RS07920 and ABID97_RS07925 are separated by 119 nucleotides
ABID97_RS07910: ABID97_RS07910 - 2OG-Fe(II) oxygenase, at 1,661,802 to 1,662,644
_RS07910
ABID97_RS07915: ABID97_RS07915 - alpha/beta hydrolase, at 1,662,658 to 1,663,557
_RS07915
ABID97_RS07920: ABID97_RS07920 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 1,663,554 to 1,664,429
_RS07920
ABID97_RS07925: ABID97_RS07925 - SDR family NAD(P)-dependent oxidoreductase, at 1,664,549 to 1,665,454
_RS07925
Position (kb)
1663
1664
1665 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1662.643 kb on - strand at 1663.277 kb on - strand, within ABID97_RS07915 at 1663.635 kb on + strand at 1663.635 kb on + strand at 1663.636 kb on - strand at 1663.636 kb on - strand at 1663.849 kb on - strand, within ABID97_RS07920 at 1663.849 kb on - strand, within ABID97_RS07920 at 1664.059 kb on - strand, within ABID97_RS07920 at 1664.191 kb on - strand, within ABID97_RS07920 at 1664.229 kb on + strand, within ABID97_RS07920 at 1664.229 kb on + strand, within ABID97_RS07920 at 1664.331 kb on + strand, within ABID97_RS07920 at 1664.332 kb on - strand, within ABID97_RS07920 at 1664.332 kb on - strand, within ABID97_RS07920 at 1664.916 kb on - strand, within ABID97_RS07925 at 1664.924 kb on + strand, within ABID97_RS07925 at 1664.925 kb on - strand, within ABID97_RS07925 at 1664.927 kb on + strand, within ABID97_RS07925 at 1664.927 kb on + strand, within ABID97_RS07925 at 1664.927 kb on + strand, within ABID97_RS07925 at 1664.927 kb on + strand, within ABID97_RS07925 at 1664.927 kb on + strand, within ABID97_RS07925 at 1664.928 kb on - strand, within ABID97_RS07925 at 1664.928 kb on - strand, within ABID97_RS07925 at 1665.017 kb on + strand, within ABID97_RS07925 at 1665.017 kb on + strand, within ABID97_RS07925 at 1665.018 kb on - strand, within ABID97_RS07925 at 1665.032 kb on + strand, within ABID97_RS07925 at 1665.033 kb on - strand, within ABID97_RS07925 at 1665.236 kb on + strand, within ABID97_RS07925 at 1665.236 kb on + strand, within ABID97_RS07925 at 1665.237 kb on - strand, within ABID97_RS07925
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 1,662,643 - +0.9 1,663,277 - ABID97_RS07915 0.69 -0.5 1,663,635 + +0.9 1,663,635 + -2.4 1,663,636 - -2.2 1,663,636 - -1.5 1,663,849 - ABID97_RS07920 0.34 -2.3 1,663,849 - ABID97_RS07920 0.34 -1.3 1,664,059 - ABID97_RS07920 0.58 +0.3 1,664,191 - ABID97_RS07920 0.73 -3.0 1,664,229 + ABID97_RS07920 0.77 -1.1 1,664,229 + ABID97_RS07920 0.77 +1.9 1,664,331 + ABID97_RS07920 0.89 -0.3 1,664,332 - ABID97_RS07920 0.89 -1.0 1,664,332 - ABID97_RS07920 0.89 +2.9 1,664,916 - ABID97_RS07925 0.41 +0.6 1,664,924 + ABID97_RS07925 0.41 +0.8 1,664,925 - ABID97_RS07925 0.42 -0.1 1,664,927 + ABID97_RS07925 0.42 -1.2 1,664,927 + ABID97_RS07925 0.42 -0.6 1,664,927 + ABID97_RS07925 0.42 -0.3 1,664,927 + ABID97_RS07925 0.42 +1.1 1,664,927 + ABID97_RS07925 0.42 -0.4 1,664,928 - ABID97_RS07925 0.42 +0.5 1,664,928 - ABID97_RS07925 0.42 -1.5 1,665,017 + ABID97_RS07925 0.52 -0.5 1,665,017 + ABID97_RS07925 0.52 -0.3 1,665,018 - ABID97_RS07925 0.52 +1.1 1,665,032 + ABID97_RS07925 0.53 -0.9 1,665,033 - ABID97_RS07925 0.53 -0.4 1,665,236 + ABID97_RS07925 0.76 -0.8 1,665,236 + ABID97_RS07925 0.76 -0.9 1,665,237 - ABID97_RS07925 0.76 +0.2
Or see this region's nucleotide sequence