Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07920

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07910 and ABID97_RS07915 are separated by 13 nucleotidesABID97_RS07915 and ABID97_RS07920 overlap by 4 nucleotidesABID97_RS07920 and ABID97_RS07925 are separated by 119 nucleotides ABID97_RS07910: ABID97_RS07910 - 2OG-Fe(II) oxygenase, at 1,661,802 to 1,662,644 _RS07910 ABID97_RS07915: ABID97_RS07915 - alpha/beta hydrolase, at 1,662,658 to 1,663,557 _RS07915 ABID97_RS07920: ABID97_RS07920 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 1,663,554 to 1,664,429 _RS07920 ABID97_RS07925: ABID97_RS07925 - SDR family NAD(P)-dependent oxidoreductase, at 1,664,549 to 1,665,454 _RS07925 Position (kb) 1663 1664 1665Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1662.643 kb on - strandat 1663.277 kb on - strand, within ABID97_RS07915at 1663.635 kb on + strandat 1663.635 kb on + strandat 1663.636 kb on - strandat 1663.636 kb on - strandat 1663.849 kb on - strand, within ABID97_RS07920at 1663.849 kb on - strand, within ABID97_RS07920at 1664.059 kb on - strand, within ABID97_RS07920at 1664.191 kb on - strand, within ABID97_RS07920at 1664.229 kb on + strand, within ABID97_RS07920at 1664.229 kb on + strand, within ABID97_RS07920at 1664.331 kb on + strand, within ABID97_RS07920at 1664.332 kb on - strand, within ABID97_RS07920at 1664.332 kb on - strand, within ABID97_RS07920at 1664.916 kb on - strand, within ABID97_RS07925at 1664.924 kb on + strand, within ABID97_RS07925at 1664.925 kb on - strand, within ABID97_RS07925at 1664.927 kb on + strand, within ABID97_RS07925at 1664.927 kb on + strand, within ABID97_RS07925at 1664.927 kb on + strand, within ABID97_RS07925at 1664.927 kb on + strand, within ABID97_RS07925at 1664.927 kb on + strand, within ABID97_RS07925at 1664.928 kb on - strand, within ABID97_RS07925at 1664.928 kb on - strand, within ABID97_RS07925at 1665.017 kb on + strand, within ABID97_RS07925at 1665.017 kb on + strand, within ABID97_RS07925at 1665.018 kb on - strand, within ABID97_RS07925at 1665.032 kb on + strand, within ABID97_RS07925at 1665.033 kb on - strand, within ABID97_RS07925at 1665.236 kb on + strand, within ABID97_RS07925at 1665.236 kb on + strand, within ABID97_RS07925at 1665.237 kb on - strand, within ABID97_RS07925

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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1,662,643 - +0.9
1,663,277 - ABID97_RS07915 0.69 -0.5
1,663,635 + +0.9
1,663,635 + -2.4
1,663,636 - -2.2
1,663,636 - -1.5
1,663,849 - ABID97_RS07920 0.34 -2.3
1,663,849 - ABID97_RS07920 0.34 -1.3
1,664,059 - ABID97_RS07920 0.58 +0.3
1,664,191 - ABID97_RS07920 0.73 -3.0
1,664,229 + ABID97_RS07920 0.77 -1.1
1,664,229 + ABID97_RS07920 0.77 +1.9
1,664,331 + ABID97_RS07920 0.89 -0.3
1,664,332 - ABID97_RS07920 0.89 -1.0
1,664,332 - ABID97_RS07920 0.89 +2.9
1,664,916 - ABID97_RS07925 0.41 +0.6
1,664,924 + ABID97_RS07925 0.41 +0.8
1,664,925 - ABID97_RS07925 0.42 -0.1
1,664,927 + ABID97_RS07925 0.42 -1.2
1,664,927 + ABID97_RS07925 0.42 -0.6
1,664,927 + ABID97_RS07925 0.42 -0.3
1,664,927 + ABID97_RS07925 0.42 +1.1
1,664,927 + ABID97_RS07925 0.42 -0.4
1,664,928 - ABID97_RS07925 0.42 +0.5
1,664,928 - ABID97_RS07925 0.42 -1.5
1,665,017 + ABID97_RS07925 0.52 -0.5
1,665,017 + ABID97_RS07925 0.52 -0.3
1,665,018 - ABID97_RS07925 0.52 +1.1
1,665,032 + ABID97_RS07925 0.53 -0.9
1,665,033 - ABID97_RS07925 0.53 -0.4
1,665,236 + ABID97_RS07925 0.76 -0.8
1,665,236 + ABID97_RS07925 0.76 -0.9
1,665,237 - ABID97_RS07925 0.76 +0.2

Or see this region's nucleotide sequence