Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07800 and ABID97_RS07805 are separated by 201 nucleotides ABID97_RS07805 and ABID97_RS07810 are separated by 11 nucleotides ABID97_RS07810 and ABID97_RS07815 are separated by 170 nucleotides
ABID97_RS07800: ABID97_RS07800 - fatty acid desaturase, at 1,639,622 to 1,640,836
_RS07800
ABID97_RS07805: ABID97_RS07805 - 50S ribosomal protein L33, at 1,641,038 to 1,641,211
_RS07805
ABID97_RS07810: ABID97_RS07810 - 50S ribosomal protein L28, at 1,641,223 to 1,641,456
_RS07810
ABID97_RS07815: ABID97_RS07815 - thioredoxin-disulfide reductase, at 1,641,627 to 1,642,586
_RS07815
Position (kb) 1641
1642 Strain fitness (log2 ratio) -1
0
1
2 at 1640.051 kb on + strand, within ABID97_RS07800 at 1640.906 kb on + strand at 1641.060 kb on + strand, within ABID97_RS07805 at 1641.061 kb on - strand, within ABID97_RS07805 at 1641.144 kb on + strand, within ABID97_RS07805 at 1641.144 kb on + strand, within ABID97_RS07805 at 1641.225 kb on - strand at 1641.628 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 1,640,051 + ABID97_RS07800 0.35 +1.9 1,640,906 + -0.3 1,641,060 + ABID97_RS07805 0.13 -1.3 1,641,061 - ABID97_RS07805 0.13 -0.3 1,641,144 + ABID97_RS07805 0.61 -1.5 1,641,144 + ABID97_RS07805 0.61 -0.4 1,641,225 - -0.1 1,641,628 + -0.7
Or see this region's nucleotide sequence