Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04115

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04105 and ABID97_RS04110 are separated by 13 nucleotidesABID97_RS04110 and ABID97_RS04115 are separated by 194 nucleotidesABID97_RS04115 and ABID97_RS04120 are separated by 182 nucleotidesABID97_RS04120 and ABID97_RS04125 are separated by 5 nucleotidesABID97_RS04125 and ABID97_RS04130 are separated by 53 nucleotides ABID97_RS04105: ABID97_RS04105 - tripartite tricarboxylate transporter permease, at 842,797 to 844,308 _RS04105 ABID97_RS04110: ABID97_RS04110 - tripartite tricarboxylate transporter TctB family protein, at 844,322 to 844,810 _RS04110 ABID97_RS04115: ABID97_RS04115 - RNA-binding protein, at 845,005 to 845,418 _RS04115 ABID97_RS04120: ABID97_RS04120 - DUF3820 family protein, at 845,601 to 845,834 _RS04120 ABID97_RS04125: ABID97_RS04125 - translation initiation factor Sui1, at 845,840 to 846,214 _RS04125 ABID97_RS04130: ABID97_RS04130 - DEAD/DEAH box helicase, at 846,268 to 847,545 _RS04130 Position (kb) 845 846Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 844.104 kb on - strand, within ABID97_RS04105at 844.107 kb on - strand, within ABID97_RS04105at 844.107 kb on - strand, within ABID97_RS04105at 844.107 kb on - strand, within ABID97_RS04105at 844.152 kb on - strand, within ABID97_RS04105at 844.152 kb on - strand, within ABID97_RS04105at 844.244 kb on + strandat 844.244 kb on + strandat 844.245 kb on - strandat 844.245 kb on - strandat 844.386 kb on + strand, within ABID97_RS04110at 844.386 kb on + strand, within ABID97_RS04110at 844.386 kb on + strand, within ABID97_RS04110at 844.386 kb on + strand, within ABID97_RS04110at 844.386 kb on + strand, within ABID97_RS04110at 844.387 kb on - strand, within ABID97_RS04110at 844.387 kb on - strand, within ABID97_RS04110at 844.387 kb on - strand, within ABID97_RS04110at 844.387 kb on - strand, within ABID97_RS04110at 844.387 kb on - strand, within ABID97_RS04110at 844.387 kb on - strand, within ABID97_RS04110at 844.387 kb on - strand, within ABID97_RS04110at 844.387 kb on - strand, within ABID97_RS04110at 844.476 kb on + strand, within ABID97_RS04110at 844.476 kb on + strand, within ABID97_RS04110at 844.477 kb on - strand, within ABID97_RS04110at 844.477 kb on - strand, within ABID97_RS04110at 844.725 kb on + strand, within ABID97_RS04110at 844.725 kb on + strand, within ABID97_RS04110at 844.725 kb on + strand, within ABID97_RS04110at 844.725 kb on + strand, within ABID97_RS04110at 844.725 kb on + strand, within ABID97_RS04110at 844.725 kb on + strand, within ABID97_RS04110at 844.726 kb on - strand, within ABID97_RS04110at 844.726 kb on - strand, within ABID97_RS04110at 844.726 kb on - strand, within ABID97_RS04110at 844.726 kb on - strand, within ABID97_RS04110at 844.726 kb on - strand, within ABID97_RS04110at 844.726 kb on - strand, within ABID97_RS04110at 844.726 kb on - strand, within ABID97_RS04110at 844.726 kb on - strand, within ABID97_RS04110at 844.726 kb on - strand, within ABID97_RS04110at 844.894 kb on + strandat 844.894 kb on + strandat 844.894 kb on + strandat 844.894 kb on + strandat 844.894 kb on + strandat 844.894 kb on + strandat 844.894 kb on + strandat 845.006 kb on + strandat 845.006 kb on + strandat 845.007 kb on - strandat 845.007 kb on - strandat 845.007 kb on - strandat 845.007 kb on - strandat 845.007 kb on - strandat 845.007 kb on - strandat 845.007 kb on - strandat 845.010 kb on - strandat 845.010 kb on - strandat 845.370 kb on + strand, within ABID97_RS04115at 845.384 kb on + strandat 845.398 kb on + strandat 845.398 kb on + strandat 845.398 kb on + strandat 845.399 kb on - strandat 845.399 kb on - strandat 845.399 kb on - strandat 845.402 kb on + strandat 845.403 kb on - strandat 845.403 kb on - strandat 845.403 kb on - strandat 845.431 kb on - strandat 845.446 kb on + strandat 845.446 kb on + strandat 845.446 kb on + strandat 845.447 kb on - strandat 845.447 kb on - strandat 845.447 kb on - strandat 845.447 kb on - strandat 845.447 kb on - strandat 845.447 kb on - strandat 845.447 kb on - strandat 845.519 kb on + strandat 845.519 kb on + strandat 845.599 kb on + strandat 845.670 kb on + strand, within ABID97_RS04120at 845.671 kb on - strand, within ABID97_RS04120at 845.671 kb on - strand, within ABID97_RS04120at 846.174 kb on + strand, within ABID97_RS04125at 846.175 kb on - strand, within ABID97_RS04125at 846.175 kb on - strand, within ABID97_RS04125at 846.175 kb on - strand, within ABID97_RS04125at 846.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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844,104 - ABID97_RS04105 0.86 -0.8
844,107 - ABID97_RS04105 0.87 -0.1
844,107 - ABID97_RS04105 0.87 -0.6
844,107 - ABID97_RS04105 0.87 -0.7
844,152 - ABID97_RS04105 0.90 -1.1
844,152 - ABID97_RS04105 0.90 -0.6
844,244 + -0.6
844,244 + -1.1
844,245 - +0.0
844,245 - -0.9
844,386 + ABID97_RS04110 0.13 -0.5
844,386 + ABID97_RS04110 0.13 -0.7
844,386 + ABID97_RS04110 0.13 +0.1
844,386 + ABID97_RS04110 0.13 -2.8
844,386 + ABID97_RS04110 0.13 -0.8
844,387 - ABID97_RS04110 0.13 -1.5
844,387 - ABID97_RS04110 0.13 -0.4
844,387 - ABID97_RS04110 0.13 -1.1
844,387 - ABID97_RS04110 0.13 -0.4
844,387 - ABID97_RS04110 0.13 -1.1
844,387 - ABID97_RS04110 0.13 +0.3
844,387 - ABID97_RS04110 0.13 -0.2
844,387 - ABID97_RS04110 0.13 +0.0
844,476 + ABID97_RS04110 0.31 -0.5
844,476 + ABID97_RS04110 0.31 -0.5
844,477 - ABID97_RS04110 0.32 -1.5
844,477 - ABID97_RS04110 0.32 -2.5
844,725 + ABID97_RS04110 0.82 -0.1
844,725 + ABID97_RS04110 0.82 -0.5
844,725 + ABID97_RS04110 0.82 -1.3
844,725 + ABID97_RS04110 0.82 -0.3
844,725 + ABID97_RS04110 0.82 -0.6
844,725 + ABID97_RS04110 0.82 -1.4
844,726 - ABID97_RS04110 0.83 -0.4
844,726 - ABID97_RS04110 0.83 -1.4
844,726 - ABID97_RS04110 0.83 +0.9
844,726 - ABID97_RS04110 0.83 -0.1
844,726 - ABID97_RS04110 0.83 -0.6
844,726 - ABID97_RS04110 0.83 -0.8
844,726 - ABID97_RS04110 0.83 -1.3
844,726 - ABID97_RS04110 0.83 +0.7
844,726 - ABID97_RS04110 0.83 -1.5
844,894 + +2.1
844,894 + -1.0
844,894 + -0.3
844,894 + -0.9
844,894 + -0.6
844,894 + -0.8
844,894 + -1.1
845,006 + -0.7
845,006 + -0.8
845,007 - -0.6
845,007 - -1.0
845,007 - +0.4
845,007 - -0.8
845,007 - -1.8
845,007 - -0.4
845,007 - -0.9
845,010 - -1.4
845,010 - -1.3
845,370 + ABID97_RS04115 0.88 -1.4
845,384 + -1.3
845,398 + -0.3
845,398 + -1.1
845,398 + -0.4
845,399 - -1.2
845,399 - -0.7
845,399 - -1.3
845,402 + -1.3
845,403 - -1.8
845,403 - -3.1
845,403 - -1.4
845,431 - -0.2
845,446 + -1.0
845,446 + -0.6
845,446 + -1.5
845,447 - +0.0
845,447 - -0.9
845,447 - -0.8
845,447 - -1.2
845,447 - -0.7
845,447 - -0.7
845,447 - -0.8
845,519 + +0.9
845,519 + -1.5
845,599 + -1.2
845,670 + ABID97_RS04120 0.29 -0.6
845,671 - ABID97_RS04120 0.30 +0.6
845,671 - ABID97_RS04120 0.30 -1.4
846,174 + ABID97_RS04125 0.89 +0.3
846,175 - ABID97_RS04125 0.89 -0.2
846,175 - ABID97_RS04125 0.89 -0.3
846,175 - ABID97_RS04125 0.89 +0.2
846,329 - -0.7

Or see this region's nucleotide sequence