Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03485

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03475 and ABID97_RS03480 overlap by 4 nucleotidesABID97_RS03480 and ABID97_RS03485 overlap by 4 nucleotidesABID97_RS03485 and ABID97_RS03490 are separated by 45 nucleotides ABID97_RS03475: ABID97_RS03475 - hypothetical protein, at 708,300 to 710,099 _RS03475 ABID97_RS03480: ABID97_RS03480 - glycosyltransferase family 2 protein, at 710,096 to 711,073 _RS03480 ABID97_RS03485: ABID97_RS03485 - GtrA family protein, at 711,070 to 711,459 _RS03485 ABID97_RS03490: ABID97_RS03490 - amidohydrolase family protein, at 711,505 to 712,704 _RS03490 Position (kb) 711 712Strain fitness (log2 ratio) -2 -1 0 1 2at 710.162 kb on + strandat 710.162 kb on + strandat 710.163 kb on - strandat 710.163 kb on - strandat 710.163 kb on - strandat 710.163 kb on - strandat 710.366 kb on + strand, within ABID97_RS03480at 710.366 kb on + strand, within ABID97_RS03480at 710.366 kb on + strand, within ABID97_RS03480at 710.367 kb on - strand, within ABID97_RS03480at 710.367 kb on - strand, within ABID97_RS03480at 710.393 kb on + strand, within ABID97_RS03480at 710.393 kb on + strand, within ABID97_RS03480at 710.394 kb on - strand, within ABID97_RS03480at 710.691 kb on - strand, within ABID97_RS03480at 710.691 kb on - strand, within ABID97_RS03480at 710.711 kb on + strand, within ABID97_RS03480at 710.711 kb on + strand, within ABID97_RS03480at 710.711 kb on + strand, within ABID97_RS03480at 710.711 kb on + strand, within ABID97_RS03480at 710.712 kb on - strand, within ABID97_RS03480at 710.712 kb on - strand, within ABID97_RS03480at 710.712 kb on - strand, within ABID97_RS03480at 710.888 kb on + strand, within ABID97_RS03480at 710.889 kb on - strandat 710.889 kb on - strand, within ABID97_RS03480at 710.889 kb on - strand, within ABID97_RS03480at 710.889 kb on - strand, within ABID97_RS03480at 710.889 kb on - strand, within ABID97_RS03480at 710.889 kb on - strand, within ABID97_RS03480at 711.145 kb on + strand, within ABID97_RS03485at 711.145 kb on + strand, within ABID97_RS03485at 711.145 kb on + strand, within ABID97_RS03485at 711.146 kb on - strand, within ABID97_RS03485at 711.146 kb on - strand, within ABID97_RS03485at 711.146 kb on - strand, within ABID97_RS03485at 711.235 kb on + strand, within ABID97_RS03485at 711.236 kb on - strand, within ABID97_RS03485at 711.280 kb on + strand, within ABID97_RS03485at 711.281 kb on - strand, within ABID97_RS03485at 711.281 kb on - strand, within ABID97_RS03485at 711.325 kb on + strand, within ABID97_RS03485at 711.326 kb on - strand, within ABID97_RS03485at 711.326 kb on - strand, within ABID97_RS03485at 711.326 kb on - strand, within ABID97_RS03485at 711.326 kb on - strand, within ABID97_RS03485at 711.334 kb on + strand, within ABID97_RS03485at 711.334 kb on + strand, within ABID97_RS03485at 711.334 kb on + strand, within ABID97_RS03485at 711.334 kb on + strand, within ABID97_RS03485at 711.334 kb on + strand, within ABID97_RS03485at 711.334 kb on + strand, within ABID97_RS03485at 711.335 kb on - strand, within ABID97_RS03485at 711.335 kb on - strand, within ABID97_RS03485at 711.335 kb on - strand, within ABID97_RS03485at 711.436 kb on + strandat 712.121 kb on + strand, within ABID97_RS03490at 712.122 kb on - strand, within ABID97_RS03490at 712.158 kb on - strand, within ABID97_RS03490

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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710,162 + -0.3
710,162 + -0.3
710,163 - +0.6
710,163 - +0.2
710,163 - +0.5
710,163 - -0.2
710,366 + ABID97_RS03480 0.28 +0.5
710,366 + ABID97_RS03480 0.28 -0.3
710,366 + ABID97_RS03480 0.28 +0.4
710,367 - ABID97_RS03480 0.28 -0.1
710,367 - ABID97_RS03480 0.28 +0.0
710,393 + ABID97_RS03480 0.30 +0.5
710,393 + ABID97_RS03480 0.30 -0.1
710,394 - ABID97_RS03480 0.30 -0.4
710,691 - ABID97_RS03480 0.61 -0.3
710,691 - ABID97_RS03480 0.61 +0.7
710,711 + ABID97_RS03480 0.63 -0.6
710,711 + ABID97_RS03480 0.63 -1.1
710,711 + ABID97_RS03480 0.63 +0.4
710,711 + ABID97_RS03480 0.63 -0.3
710,712 - ABID97_RS03480 0.63 -0.8
710,712 - ABID97_RS03480 0.63 -0.5
710,712 - ABID97_RS03480 0.63 -0.7
710,888 + ABID97_RS03480 0.81 -0.8
710,889 - +1.8
710,889 - ABID97_RS03480 0.81 +0.4
710,889 - ABID97_RS03480 0.81 -0.9
710,889 - ABID97_RS03480 0.81 -0.0
710,889 - ABID97_RS03480 0.81 +0.2
710,889 - ABID97_RS03480 0.81 +0.5
711,145 + ABID97_RS03485 0.19 -1.2
711,145 + ABID97_RS03485 0.19 -0.0
711,145 + ABID97_RS03485 0.19 -1.6
711,146 - ABID97_RS03485 0.19 -0.2
711,146 - ABID97_RS03485 0.19 -1.7
711,146 - ABID97_RS03485 0.19 +0.2
711,235 + ABID97_RS03485 0.42 -2.4
711,236 - ABID97_RS03485 0.43 -1.8
711,280 + ABID97_RS03485 0.54 -2.3
711,281 - ABID97_RS03485 0.54 -2.1
711,281 - ABID97_RS03485 0.54 -1.9
711,325 + ABID97_RS03485 0.65 -1.3
711,326 - ABID97_RS03485 0.66 -1.0
711,326 - ABID97_RS03485 0.66 -1.3
711,326 - ABID97_RS03485 0.66 -1.2
711,326 - ABID97_RS03485 0.66 -0.2
711,334 + ABID97_RS03485 0.68 -1.3
711,334 + ABID97_RS03485 0.68 -1.2
711,334 + ABID97_RS03485 0.68 -0.9
711,334 + ABID97_RS03485 0.68 -0.6
711,334 + ABID97_RS03485 0.68 -1.6
711,334 + ABID97_RS03485 0.68 -1.9
711,335 - ABID97_RS03485 0.68 -0.8
711,335 - ABID97_RS03485 0.68 -1.7
711,335 - ABID97_RS03485 0.68 -2.2
711,436 + -1.1
712,121 + ABID97_RS03490 0.51 -0.6
712,122 - ABID97_RS03490 0.51 -0.1
712,158 - ABID97_RS03490 0.54 -0.7

Or see this region's nucleotide sequence