Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02390

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02375 and ABID97_RS02380 overlap by 19 nucleotidesABID97_RS02380 and ABID97_RS02385 are separated by 173 nucleotidesABID97_RS02385 and ABID97_RS02390 are separated by 27 nucleotidesABID97_RS02390 and ABID97_RS02395 are separated by 11 nucleotides ABID97_RS02375: ABID97_RS02375 - anti-phage dCTP deaminase, at 477,989 to 479,488 _RS02375 ABID97_RS02380: ABID97_RS02380 - hypothetical protein, at 479,470 to 479,649 _RS02380 ABID97_RS02385: ABID97_RS02385 - peptidylprolyl isomerase, at 479,823 to 480,299 _RS02385 ABID97_RS02390: ABID97_RS02390 - CYTH and CHAD domain-containing protein, at 480,327 to 481,907 _RS02390 ABID97_RS02395: ABID97_RS02395 - amidase family protein, at 481,919 to 483,307 _RS02395 Position (kb) 480 481 482Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 479.355 kb on + strandat 479.355 kb on + strandat 479.411 kb on + strandat 479.412 kb on - strandat 479.412 kb on - strandat 479.412 kb on - strandat 479.434 kb on - strandat 479.487 kb on - strandat 479.579 kb on - strand, within ABID97_RS02380at 479.617 kb on - strand, within ABID97_RS02380at 479.620 kb on - strand, within ABID97_RS02380at 479.620 kb on - strand, within ABID97_RS02380at 479.628 kb on - strand, within ABID97_RS02380at 479.678 kb on + strandat 479.687 kb on + strandat 479.687 kb on + strandat 479.687 kb on + strandat 479.687 kb on + strandat 479.715 kb on + strandat 479.715 kb on + strandat 479.716 kb on - strandat 479.751 kb on - strandat 479.859 kb on + strandat 479.859 kb on + strandat 479.859 kb on + strandat 479.859 kb on + strandat 479.859 kb on + strandat 479.859 kb on + strandat 479.859 kb on + strandat 479.860 kb on - strandat 479.860 kb on - strandat 479.860 kb on - strandat 479.916 kb on + strand, within ABID97_RS02385at 479.916 kb on + strand, within ABID97_RS02385at 479.916 kb on + strand, within ABID97_RS02385at 479.917 kb on - strand, within ABID97_RS02385at 479.917 kb on - strand, within ABID97_RS02385at 479.917 kb on - strand, within ABID97_RS02385at 480.328 kb on + strandat 480.328 kb on + strandat 480.328 kb on + strandat 480.328 kb on + strandat 480.329 kb on - strandat 480.329 kb on - strandat 480.329 kb on - strandat 480.433 kb on + strandat 480.433 kb on + strandat 480.434 kb on - strandat 480.434 kb on - strandat 480.434 kb on - strandat 480.434 kb on - strandat 480.470 kb on - strandat 480.541 kb on + strand, within ABID97_RS02390at 480.541 kb on + strand, within ABID97_RS02390at 480.541 kb on + strand, within ABID97_RS02390at 480.542 kb on - strand, within ABID97_RS02390at 480.542 kb on - strand, within ABID97_RS02390at 480.604 kb on + strand, within ABID97_RS02390at 480.705 kb on + strand, within ABID97_RS02390at 480.705 kb on + strand, within ABID97_RS02390at 481.804 kb on + strandat 481.805 kb on - strandat 481.805 kb on - strandat 481.805 kb on - strandat 481.883 kb on + strandat 481.883 kb on + strandat 481.884 kb on - strandat 481.884 kb on - strandat 481.884 kb on - strandat 482.363 kb on + strand, within ABID97_RS02395at 482.363 kb on + strand, within ABID97_RS02395at 482.364 kb on - strand, within ABID97_RS02395at 482.364 kb on - strand, within ABID97_RS02395at 482.364 kb on - strand, within ABID97_RS02395at 482.364 kb on - strand, within ABID97_RS02395at 482.516 kb on + strand, within ABID97_RS02395at 482.517 kb on - strand, within ABID97_RS02395at 482.891 kb on + strand, within ABID97_RS02395at 482.891 kb on + strand, within ABID97_RS02395at 482.891 kb on + strand, within ABID97_RS02395at 482.891 kb on + strand, within ABID97_RS02395at 482.892 kb on - strand, within ABID97_RS02395at 482.892 kb on - strand, within ABID97_RS02395at 482.892 kb on - strand, within ABID97_RS02395at 482.892 kb on - strand, within ABID97_RS02395at 482.892 kb on - strand, within ABID97_RS02395at 482.892 kb on - strand, within ABID97_RS02395at 482.892 kb on - strand, within ABID97_RS02395

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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479,355 + -0.2
479,355 + -0.4
479,411 + +1.2
479,412 - -0.1
479,412 - -0.4
479,412 - -0.8
479,434 - +1.3
479,487 - -0.3
479,579 - ABID97_RS02380 0.61 -0.5
479,617 - ABID97_RS02380 0.82 +1.1
479,620 - ABID97_RS02380 0.83 -1.6
479,620 - ABID97_RS02380 0.83 +0.8
479,628 - ABID97_RS02380 0.88 -1.2
479,678 + -0.3
479,687 + -0.5
479,687 + -0.0
479,687 + -0.0
479,687 + -0.2
479,715 + -0.7
479,715 + -0.4
479,716 - -0.2
479,751 - -0.2
479,859 + -0.4
479,859 + -0.1
479,859 + +1.2
479,859 + -0.6
479,859 + +0.1
479,859 + +1.8
479,859 + +0.3
479,860 - +0.1
479,860 - -0.3
479,860 - -0.4
479,916 + ABID97_RS02385 0.19 -1.0
479,916 + ABID97_RS02385 0.19 +0.2
479,916 + ABID97_RS02385 0.19 +0.4
479,917 - ABID97_RS02385 0.20 -0.3
479,917 - ABID97_RS02385 0.20 +0.3
479,917 - ABID97_RS02385 0.20 +3.9
480,328 + +0.1
480,328 + -0.2
480,328 + -0.0
480,328 + -0.0
480,329 - +0.6
480,329 - -0.1
480,329 - +0.3
480,433 + +0.3
480,433 + -0.4
480,434 - -0.7
480,434 - -2.0
480,434 - -0.0
480,434 - +0.2
480,470 - -0.5
480,541 + ABID97_RS02390 0.14 +0.8
480,541 + ABID97_RS02390 0.14 +0.3
480,541 + ABID97_RS02390 0.14 +0.4
480,542 - ABID97_RS02390 0.14 -0.1
480,542 - ABID97_RS02390 0.14 -0.4
480,604 + ABID97_RS02390 0.18 -0.3
480,705 + ABID97_RS02390 0.24 -0.5
480,705 + ABID97_RS02390 0.24 +0.1
481,804 + -0.3
481,805 - -0.2
481,805 - -0.8
481,805 - +0.3
481,883 + -0.7
481,883 + -0.5
481,884 - -0.5
481,884 - -0.5
481,884 - -0.1
482,363 + ABID97_RS02395 0.32 -0.4
482,363 + ABID97_RS02395 0.32 +0.1
482,364 - ABID97_RS02395 0.32 -0.4
482,364 - ABID97_RS02395 0.32 +0.2
482,364 - ABID97_RS02395 0.32 -0.4
482,364 - ABID97_RS02395 0.32 -0.2
482,516 + ABID97_RS02395 0.43 +0.6
482,517 - ABID97_RS02395 0.43 +0.1
482,891 + ABID97_RS02395 0.70 -0.4
482,891 + ABID97_RS02395 0.70 -0.4
482,891 + ABID97_RS02395 0.70 -0.2
482,891 + ABID97_RS02395 0.70 -0.4
482,892 - ABID97_RS02395 0.70 -0.3
482,892 - ABID97_RS02395 0.70 +0.2
482,892 - ABID97_RS02395 0.70 -0.5
482,892 - ABID97_RS02395 0.70 -0.6
482,892 - ABID97_RS02395 0.70 -0.5
482,892 - ABID97_RS02395 0.70 +0.5
482,892 - ABID97_RS02395 0.70 -0.1

Or see this region's nucleotide sequence