Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02225

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02220 and ABID97_RS02225 are separated by 36 nucleotidesABID97_RS02225 and ABID97_RS02230 are separated by 71 nucleotidesABID97_RS02230 and ABID97_RS02235 are separated by 27 nucleotides ABID97_RS02220: ABID97_RS02220 - adenylate/guanylate cyclase domain-containing protein, at 448,800 to 451,061 _RS02220 ABID97_RS02225: ABID97_RS02225 - FHA domain-containing protein, at 451,098 to 451,751 _RS02225 ABID97_RS02230: ABID97_RS02230 - Stp1/IreP family PP2C-type Ser/Thr phosphatase, at 451,823 to 452,629 _RS02230 ABID97_RS02235: ABID97_RS02235 - TerC family protein, at 452,657 to 453,343 _RS02235 Position (kb) 451 452Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 450.133 kb on + strand, within ABID97_RS02220at 450.133 kb on + strand, within ABID97_RS02220at 450.134 kb on - strand, within ABID97_RS02220at 450.304 kb on + strand, within ABID97_RS02220at 450.328 kb on + strand, within ABID97_RS02220at 450.328 kb on + strand, within ABID97_RS02220at 450.329 kb on - strand, within ABID97_RS02220at 450.329 kb on - strand, within ABID97_RS02220at 450.329 kb on - strand, within ABID97_RS02220at 450.329 kb on - strand, within ABID97_RS02220at 450.332 kb on - strand, within ABID97_RS02220at 450.359 kb on - strand, within ABID97_RS02220at 450.359 kb on - strand, within ABID97_RS02220at 450.583 kb on + strand, within ABID97_RS02220at 450.583 kb on + strand, within ABID97_RS02220at 450.583 kb on + strand, within ABID97_RS02220at 450.584 kb on - strand, within ABID97_RS02220at 450.584 kb on - strand, within ABID97_RS02220at 450.584 kb on - strand, within ABID97_RS02220at 450.584 kb on - strand, within ABID97_RS02220at 450.586 kb on + strand, within ABID97_RS02220at 450.586 kb on + strand, within ABID97_RS02220at 450.587 kb on - strand, within ABID97_RS02220at 450.587 kb on - strand, within ABID97_RS02220at 450.587 kb on - strand, within ABID97_RS02220at 450.587 kb on - strand, within ABID97_RS02220at 450.937 kb on + strandat 450.938 kb on - strandat 451.228 kb on + strand, within ABID97_RS02225at 451.228 kb on + strand, within ABID97_RS02225at 451.228 kb on + strand, within ABID97_RS02225at 451.228 kb on + strand, within ABID97_RS02225at 451.229 kb on - strand, within ABID97_RS02225at 451.308 kb on - strand, within ABID97_RS02225at 451.308 kb on - strand, within ABID97_RS02225at 451.555 kb on + strand, within ABID97_RS02225at 451.555 kb on + strand, within ABID97_RS02225at 451.555 kb on + strand, within ABID97_RS02225at 451.555 kb on + strand, within ABID97_RS02225at 451.555 kb on + strand, within ABID97_RS02225at 451.555 kb on + strand, within ABID97_RS02225at 451.555 kb on + strand, within ABID97_RS02225at 451.555 kb on + strand, within ABID97_RS02225at 451.555 kb on + strand, within ABID97_RS02225at 451.555 kb on + strand, within ABID97_RS02225at 451.556 kb on - strand, within ABID97_RS02225at 451.556 kb on - strand, within ABID97_RS02225at 451.556 kb on - strand, within ABID97_RS02225at 451.556 kb on - strand, within ABID97_RS02225at 451.556 kb on - strand, within ABID97_RS02225at 451.556 kb on - strand, within ABID97_RS02225at 451.556 kb on - strand, within ABID97_RS02225at 451.556 kb on - strand, within ABID97_RS02225at 451.556 kb on - strand, within ABID97_RS02225at 451.556 kb on - strand, within ABID97_RS02225at 451.556 kb on - strand, within ABID97_RS02225at 451.663 kb on + strand, within ABID97_RS02225at 451.663 kb on + strand, within ABID97_RS02225at 451.663 kb on + strand, within ABID97_RS02225at 451.664 kb on - strand, within ABID97_RS02225at 451.664 kb on - strand, within ABID97_RS02225at 451.664 kb on - strand, within ABID97_RS02225at 451.664 kb on - strand, within ABID97_RS02225at 451.664 kb on - strand, within ABID97_RS02225at 451.825 kb on - strandat 451.825 kb on - strandat 451.879 kb on + strandat 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.209 kb on - strand, within ABID97_RS02230at 452.227 kb on + strand, within ABID97_RS02230at 452.404 kb on - strand, within ABID97_RS02230at 452.404 kb on - strand, within ABID97_RS02230at 452.469 kb on + strand, within ABID97_RS02230at 452.469 kb on + strand, within ABID97_RS02230at 452.469 kb on + strand, within ABID97_RS02230at 452.469 kb on + strand, within ABID97_RS02230at 452.469 kb on + strand, within ABID97_RS02230at 452.470 kb on - strand, within ABID97_RS02230at 452.470 kb on - strand, within ABID97_RS02230at 452.470 kb on - strand, within ABID97_RS02230at 452.549 kb on - strandat 452.574 kb on + strandat 452.575 kb on - strandat 452.575 kb on - strandat 452.742 kb on + strand, within ABID97_RS02235at 452.742 kb on + strand, within ABID97_RS02235at 452.743 kb on - strand, within ABID97_RS02235at 452.743 kb on - strand, within ABID97_RS02235at 452.743 kb on - strand, within ABID97_RS02235at 452.743 kb on - strand, within ABID97_RS02235at 452.743 kb on - strand, within ABID97_RS02235at 452.743 kb on - strand, within ABID97_RS02235at 452.743 kb on - strand, within ABID97_RS02235

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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450,133 + ABID97_RS02220 0.59 -0.1
450,133 + ABID97_RS02220 0.59 +0.0
450,134 - ABID97_RS02220 0.59 -2.8
450,304 + ABID97_RS02220 0.66 +0.2
450,328 + ABID97_RS02220 0.68 -0.2
450,328 + ABID97_RS02220 0.68 -0.2
450,329 - ABID97_RS02220 0.68 -1.1
450,329 - ABID97_RS02220 0.68 -0.3
450,329 - ABID97_RS02220 0.68 -1.2
450,329 - ABID97_RS02220 0.68 -0.5
450,332 - ABID97_RS02220 0.68 -0.7
450,359 - ABID97_RS02220 0.69 -0.5
450,359 - ABID97_RS02220 0.69 +1.2
450,583 + ABID97_RS02220 0.79 -0.4
450,583 + ABID97_RS02220 0.79 -0.2
450,583 + ABID97_RS02220 0.79 -0.2
450,584 - ABID97_RS02220 0.79 -0.1
450,584 - ABID97_RS02220 0.79 -0.0
450,584 - ABID97_RS02220 0.79 +0.2
450,584 - ABID97_RS02220 0.79 -0.3
450,586 + ABID97_RS02220 0.79 -0.3
450,586 + ABID97_RS02220 0.79 -0.5
450,587 - ABID97_RS02220 0.79 -0.8
450,587 - ABID97_RS02220 0.79 -0.3
450,587 - ABID97_RS02220 0.79 -0.3
450,587 - ABID97_RS02220 0.79 -0.1
450,937 + +0.1
450,938 - -1.5
451,228 + ABID97_RS02225 0.20 -2.8
451,228 + ABID97_RS02225 0.20 -1.2
451,228 + ABID97_RS02225 0.20 -1.8
451,228 + ABID97_RS02225 0.20 -3.2
451,229 - ABID97_RS02225 0.20 -3.7
451,308 - ABID97_RS02225 0.32 -3.0
451,308 - ABID97_RS02225 0.32 -2.4
451,555 + ABID97_RS02225 0.70 -2.0
451,555 + ABID97_RS02225 0.70 -2.2
451,555 + ABID97_RS02225 0.70 -0.8
451,555 + ABID97_RS02225 0.70 -2.0
451,555 + ABID97_RS02225 0.70 -2.8
451,555 + ABID97_RS02225 0.70 -2.0
451,555 + ABID97_RS02225 0.70 -1.7
451,555 + ABID97_RS02225 0.70 -1.8
451,555 + ABID97_RS02225 0.70 -0.9
451,555 + ABID97_RS02225 0.70 -1.0
451,556 - ABID97_RS02225 0.70 -2.3
451,556 - ABID97_RS02225 0.70 -0.9
451,556 - ABID97_RS02225 0.70 -2.1
451,556 - ABID97_RS02225 0.70 -2.5
451,556 - ABID97_RS02225 0.70 -2.3
451,556 - ABID97_RS02225 0.70 -2.1
451,556 - ABID97_RS02225 0.70 -0.2
451,556 - ABID97_RS02225 0.70 -0.5
451,556 - ABID97_RS02225 0.70 -1.9
451,556 - ABID97_RS02225 0.70 -2.0
451,556 - ABID97_RS02225 0.70 -3.3
451,663 + ABID97_RS02225 0.86 -2.0
451,663 + ABID97_RS02225 0.86 -1.9
451,663 + ABID97_RS02225 0.86 -1.7
451,664 - ABID97_RS02225 0.87 -1.9
451,664 - ABID97_RS02225 0.87 -3.2
451,664 - ABID97_RS02225 0.87 +0.8
451,664 - ABID97_RS02225 0.87 -1.0
451,664 - ABID97_RS02225 0.87 -2.8
451,825 - +0.1
451,825 - -0.2
451,879 + -0.8
452,013 + ABID97_RS02230 0.24 -1.2
452,013 + ABID97_RS02230 0.24 +1.8
452,013 + ABID97_RS02230 0.24 -2.2
452,013 + ABID97_RS02230 0.24 -2.3
452,013 + ABID97_RS02230 0.24 -1.1
452,013 + ABID97_RS02230 0.24 -1.9
452,013 + ABID97_RS02230 0.24 -1.4
452,013 + ABID97_RS02230 0.24 -2.6
452,013 + ABID97_RS02230 0.24 -2.6
452,013 + ABID97_RS02230 0.24 -2.1
452,013 + ABID97_RS02230 0.24 -1.9
452,014 - ABID97_RS02230 0.24 -2.1
452,014 - ABID97_RS02230 0.24 -1.0
452,014 - ABID97_RS02230 0.24 -0.2
452,014 - ABID97_RS02230 0.24 -1.3
452,014 - ABID97_RS02230 0.24 -1.3
452,014 - ABID97_RS02230 0.24 -0.9
452,014 - ABID97_RS02230 0.24 -1.7
452,014 - ABID97_RS02230 0.24 -0.6
452,014 - ABID97_RS02230 0.24 -2.2
452,014 - ABID97_RS02230 0.24 -0.2
452,014 - ABID97_RS02230 0.24 -1.1
452,014 - ABID97_RS02230 0.24 -1.4
452,209 - ABID97_RS02230 0.48 -0.2
452,227 + ABID97_RS02230 0.50 -0.1
452,404 - ABID97_RS02230 0.72 -1.4
452,404 - ABID97_RS02230 0.72 -1.0
452,469 + ABID97_RS02230 0.80 -2.1
452,469 + ABID97_RS02230 0.80 -1.0
452,469 + ABID97_RS02230 0.80 -2.7
452,469 + ABID97_RS02230 0.80 -1.6
452,469 + ABID97_RS02230 0.80 -1.3
452,470 - ABID97_RS02230 0.80 -1.3
452,470 - ABID97_RS02230 0.80 -1.4
452,470 - ABID97_RS02230 0.80 -1.1
452,549 - -0.4
452,574 + -2.2
452,575 - -1.0
452,575 - -2.2
452,742 + ABID97_RS02235 0.12 -0.1
452,742 + ABID97_RS02235 0.12 -1.5
452,743 - ABID97_RS02235 0.13 -0.3
452,743 - ABID97_RS02235 0.13 -0.9
452,743 - ABID97_RS02235 0.13 -0.3
452,743 - ABID97_RS02235 0.13 -0.4
452,743 - ABID97_RS02235 0.13 +0.4
452,743 - ABID97_RS02235 0.13 -1.2
452,743 - ABID97_RS02235 0.13 +0.5

Or see this region's nucleotide sequence