Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02160

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02155 and ABID97_RS02160 overlap by 4 nucleotidesABID97_RS02160 and ABID97_RS02165 are separated by 96 nucleotides ABID97_RS02155: ABID97_RS02155 - glycosyltransferase family 4 protein, at 434,017 to 435,243 _RS02155 ABID97_RS02160: ABID97_RS02160 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 435,240 to 436,331 _RS02160 ABID97_RS02165: ABID97_RS02165 - glycosyltransferase, at 436,428 to 437,525 _RS02165 Position (kb) 435 436 437Strain fitness (log2 ratio) -1 0 1 2 3 4at 434.259 kb on - strand, within ABID97_RS02155at 434.259 kb on - strand, within ABID97_RS02155at 434.321 kb on + strand, within ABID97_RS02155at 434.322 kb on - strand, within ABID97_RS02155at 434.322 kb on - strand, within ABID97_RS02155at 434.386 kb on + strand, within ABID97_RS02155at 434.386 kb on + strand, within ABID97_RS02155at 434.387 kb on - strand, within ABID97_RS02155at 434.387 kb on - strand, within ABID97_RS02155at 434.387 kb on - strand, within ABID97_RS02155at 434.387 kb on - strand, within ABID97_RS02155at 434.387 kb on - strand, within ABID97_RS02155at 434.387 kb on - strand, within ABID97_RS02155at 434.387 kb on - strand, within ABID97_RS02155at 434.540 kb on + strand, within ABID97_RS02155at 434.540 kb on + strand, within ABID97_RS02155at 434.540 kb on + strand, within ABID97_RS02155at 434.541 kb on - strand, within ABID97_RS02155at 434.655 kb on + strand, within ABID97_RS02155at 434.864 kb on - strand, within ABID97_RS02155at 434.864 kb on - strand, within ABID97_RS02155at 434.864 kb on - strand, within ABID97_RS02155at 434.903 kb on + strand, within ABID97_RS02155at 434.904 kb on - strand, within ABID97_RS02155at 434.904 kb on - strand, within ABID97_RS02155at 434.904 kb on - strand, within ABID97_RS02155at 434.904 kb on - strand, within ABID97_RS02155at 434.904 kb on - strand, within ABID97_RS02155at 434.908 kb on - strand, within ABID97_RS02155at 434.908 kb on - strand, within ABID97_RS02155at 435.024 kb on - strand, within ABID97_RS02155at 435.024 kb on - strand, within ABID97_RS02155at 435.109 kb on + strand, within ABID97_RS02155at 435.176 kb on + strandat 435.176 kb on + strandat 435.176 kb on + strandat 435.177 kb on - strandat 435.218 kb on + strandat 435.323 kb on + strandat 435.399 kb on + strand, within ABID97_RS02160at 435.828 kb on + strand, within ABID97_RS02160at 435.828 kb on + strand, within ABID97_RS02160at 435.828 kb on + strand, within ABID97_RS02160at 435.864 kb on - strand, within ABID97_RS02160at 435.864 kb on - strand, within ABID97_RS02160at 435.864 kb on - strand, within ABID97_RS02160at 435.868 kb on - strand, within ABID97_RS02160at 435.868 kb on - strand, within ABID97_RS02160at 436.041 kb on - strand, within ABID97_RS02160at 436.041 kb on - strand, within ABID97_RS02160at 436.041 kb on - strand, within ABID97_RS02160at 436.041 kb on - strand, within ABID97_RS02160at 436.051 kb on + strand, within ABID97_RS02160at 436.173 kb on - strand, within ABID97_RS02160at 436.292 kb on + strandat 436.292 kb on + strandat 436.333 kb on + strandat 436.333 kb on + strandat 436.380 kb on + strandat 436.460 kb on - strandat 436.612 kb on - strand, within ABID97_RS02165at 436.638 kb on + strand, within ABID97_RS02165at 436.656 kb on + strand, within ABID97_RS02165at 436.656 kb on + strand, within ABID97_RS02165at 436.656 kb on + strand, within ABID97_RS02165at 436.657 kb on - strand, within ABID97_RS02165at 436.657 kb on - strand, within ABID97_RS02165at 436.747 kb on + strand, within ABID97_RS02165at 436.747 kb on + strand, within ABID97_RS02165at 436.748 kb on - strand, within ABID97_RS02165at 436.748 kb on - strand, within ABID97_RS02165at 436.748 kb on - strand, within ABID97_RS02165at 436.748 kb on - strand, within ABID97_RS02165at 436.771 kb on - strand, within ABID97_RS02165at 436.966 kb on + strand, within ABID97_RS02165at 436.966 kb on + strand, within ABID97_RS02165at 436.966 kb on + strand, within ABID97_RS02165at 436.967 kb on - strand, within ABID97_RS02165at 436.967 kb on - strand, within ABID97_RS02165at 436.967 kb on - strand, within ABID97_RS02165at 437.206 kb on + strand, within ABID97_RS02165at 437.206 kb on + strand, within ABID97_RS02165at 437.206 kb on + strand, within ABID97_RS02165at 437.206 kb on + strand, within ABID97_RS02165at 437.207 kb on - strand, within ABID97_RS02165at 437.207 kb on - strand, within ABID97_RS02165at 437.207 kb on - strand, within ABID97_RS02165at 437.253 kb on + strand, within ABID97_RS02165at 437.298 kb on + strand, within ABID97_RS02165at 437.299 kb on - strand, within ABID97_RS02165

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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434,259 - ABID97_RS02155 0.20 +3.4
434,259 - ABID97_RS02155 0.20 +3.5
434,321 + ABID97_RS02155 0.25 +3.5
434,322 - ABID97_RS02155 0.25 +3.6
434,322 - ABID97_RS02155 0.25 +3.7
434,386 + ABID97_RS02155 0.30 +3.3
434,386 + ABID97_RS02155 0.30 +3.8
434,387 - ABID97_RS02155 0.30 +2.7
434,387 - ABID97_RS02155 0.30 +3.7
434,387 - ABID97_RS02155 0.30 +3.6
434,387 - ABID97_RS02155 0.30 +3.4
434,387 - ABID97_RS02155 0.30 +3.1
434,387 - ABID97_RS02155 0.30 +3.8
434,387 - ABID97_RS02155 0.30 +3.5
434,540 + ABID97_RS02155 0.43 +3.4
434,540 + ABID97_RS02155 0.43 +3.6
434,540 + ABID97_RS02155 0.43 +3.3
434,541 - ABID97_RS02155 0.43 +3.7
434,655 + ABID97_RS02155 0.52 +3.5
434,864 - ABID97_RS02155 0.69 +4.0
434,864 - ABID97_RS02155 0.69 +3.5
434,864 - ABID97_RS02155 0.69 +3.5
434,903 + ABID97_RS02155 0.72 +2.9
434,904 - ABID97_RS02155 0.72 +3.1
434,904 - ABID97_RS02155 0.72 +3.6
434,904 - ABID97_RS02155 0.72 +2.7
434,904 - ABID97_RS02155 0.72 +2.9
434,904 - ABID97_RS02155 0.72 +3.9
434,908 - ABID97_RS02155 0.73 +3.3
434,908 - ABID97_RS02155 0.73 +3.0
435,024 - ABID97_RS02155 0.82 +3.8
435,024 - ABID97_RS02155 0.82 +4.4
435,109 + ABID97_RS02155 0.89 +3.6
435,176 + +3.4
435,176 + +3.6
435,176 + +3.7
435,177 - +3.4
435,218 + +3.4
435,323 + +3.6
435,399 + ABID97_RS02160 0.15 +3.5
435,828 + ABID97_RS02160 0.54 +3.4
435,828 + ABID97_RS02160 0.54 +3.7
435,828 + ABID97_RS02160 0.54 +3.3
435,864 - ABID97_RS02160 0.57 +3.3
435,864 - ABID97_RS02160 0.57 +3.8
435,864 - ABID97_RS02160 0.57 +3.5
435,868 - ABID97_RS02160 0.58 +4.3
435,868 - ABID97_RS02160 0.58 +3.2
436,041 - ABID97_RS02160 0.73 +3.4
436,041 - ABID97_RS02160 0.73 +3.1
436,041 - ABID97_RS02160 0.73 +3.4
436,041 - ABID97_RS02160 0.73 +3.6
436,051 + ABID97_RS02160 0.74 +3.5
436,173 - ABID97_RS02160 0.85 +3.5
436,292 + +2.2
436,292 + +3.7
436,333 + -0.0
436,333 + -0.5
436,380 + -1.0
436,460 - +3.5
436,612 - ABID97_RS02165 0.17 +4.3
436,638 + ABID97_RS02165 0.19 +3.7
436,656 + ABID97_RS02165 0.21 +3.2
436,656 + ABID97_RS02165 0.21 +3.5
436,656 + ABID97_RS02165 0.21 +3.6
436,657 - ABID97_RS02165 0.21 +3.4
436,657 - ABID97_RS02165 0.21 +3.9
436,747 + ABID97_RS02165 0.29 +3.5
436,747 + ABID97_RS02165 0.29 +3.6
436,748 - ABID97_RS02165 0.29 +3.4
436,748 - ABID97_RS02165 0.29 +3.4
436,748 - ABID97_RS02165 0.29 +2.8
436,748 - ABID97_RS02165 0.29 +2.2
436,771 - ABID97_RS02165 0.31 +3.2
436,966 + ABID97_RS02165 0.49 +4.3
436,966 + ABID97_RS02165 0.49 +3.6
436,966 + ABID97_RS02165 0.49 +3.6
436,967 - ABID97_RS02165 0.49 +3.5
436,967 - ABID97_RS02165 0.49 +3.5
436,967 - ABID97_RS02165 0.49 +3.3
437,206 + ABID97_RS02165 0.71 +3.6
437,206 + ABID97_RS02165 0.71 +3.6
437,206 + ABID97_RS02165 0.71 +3.5
437,206 + ABID97_RS02165 0.71 +3.4
437,207 - ABID97_RS02165 0.71 +3.8
437,207 - ABID97_RS02165 0.71 +3.4
437,207 - ABID97_RS02165 0.71 +3.5
437,253 + ABID97_RS02165 0.75 +3.3
437,298 + ABID97_RS02165 0.79 +3.5
437,299 - ABID97_RS02165 0.79 +2.7

Or see this region's nucleotide sequence