Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02060 and ABID97_RS02065 are separated by 34 nucleotides ABID97_RS02065 and ABID97_RS02070 are separated by 3 nucleotides ABID97_RS02070 and ABID97_RS02075 are separated by 9 nucleotides ABID97_RS02075 and ABID97_RS02080 are separated by 485 nucleotides
ABID97_RS02060: ABID97_RS02060 - TonB-dependent siderophore receptor, at 414,077 to 416,209
_RS02060
ABID97_RS02065: ABID97_RS02065 - YaeQ family protein, at 416,244 to 416,804
_RS02065
ABID97_RS02070: ABID97_RS02070 - DUF2007 domain-containing protein, at 416,808 to 417,113
_RS02070
ABID97_RS02075: ABID97_RS02075 - DUF3717 domain-containing protein, at 417,123 to 417,587
_RS02075
ABID97_RS02080: ABID97_RS02080 - TerC family protein, at 418,073 to 418,819
_RS02080
Position (kb) 417
418 Strain fitness (log2 ratio) -2
-1
0
1
2 at 416.124 kb on - strand at 416.124 kb on - strand at 416.124 kb on - strand at 416.127 kb on - strand at 416.159 kb on + strand at 416.159 kb on + strand at 416.160 kb on - strand at 416.160 kb on - strand at 416.183 kb on + strand at 416.184 kb on - strand at 416.184 kb on - strand at 416.229 kb on + strand at 416.229 kb on + strand at 416.230 kb on - strand at 416.230 kb on - strand at 416.230 kb on - strand at 416.230 kb on - strand at 416.308 kb on - strand, within ABID97_RS02065 at 416.583 kb on + strand, within ABID97_RS02065 at 416.583 kb on + strand, within ABID97_RS02065 at 416.583 kb on + strand, within ABID97_RS02065 at 416.584 kb on - strand, within ABID97_RS02065 at 416.584 kb on - strand, within ABID97_RS02065 at 416.584 kb on - strand, within ABID97_RS02065 at 416.584 kb on - strand, within ABID97_RS02065 at 416.661 kb on + strand, within ABID97_RS02065 at 416.661 kb on + strand, within ABID97_RS02065 at 416.662 kb on - strand, within ABID97_RS02065 at 416.802 kb on + strand at 416.802 kb on + strand at 416.803 kb on - strand at 416.803 kb on - strand at 417.388 kb on + strand, within ABID97_RS02075 at 417.388 kb on + strand, within ABID97_RS02075 at 417.472 kb on + strand, within ABID97_RS02075 at 417.473 kb on - strand, within ABID97_RS02075 at 417.473 kb on - strand, within ABID97_RS02075 at 417.473 kb on - strand, within ABID97_RS02075 at 417.473 kb on - strand, within ABID97_RS02075 at 417.619 kb on - strand at 417.619 kb on - strand at 417.619 kb on - strand at 417.619 kb on - strand at 417.619 kb on - strand at 417.652 kb on + strand at 417.783 kb on + strand at 417.784 kb on - strand at 418.008 kb on + strand at 418.008 kb on + strand at 418.008 kb on + strand at 418.008 kb on + strand at 418.008 kb on + strand at 418.009 kb on - strand at 418.072 kb on + strand at 418.072 kb on + strand at 418.072 kb on + strand at 418.072 kb on + strand at 418.072 kb on + strand at 418.072 kb on + strand at 418.072 kb on + strand at 418.073 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 416,124 - -0.9 416,124 - -0.8 416,124 - +0.4 416,127 - +0.0 416,159 + -0.9 416,159 + -0.7 416,160 - -0.1 416,160 - -1.3 416,183 + -0.5 416,184 - -1.5 416,184 - -0.7 416,229 + -0.1 416,229 + +1.8 416,230 - -0.1 416,230 - +0.4 416,230 - +0.4 416,230 - +0.6 416,308 - ABID97_RS02065 0.11 +0.3 416,583 + ABID97_RS02065 0.60 -0.5 416,583 + ABID97_RS02065 0.60 +0.3 416,583 + ABID97_RS02065 0.60 -0.1 416,584 - ABID97_RS02065 0.61 +0.1 416,584 - ABID97_RS02065 0.61 -0.1 416,584 - ABID97_RS02065 0.61 -1.2 416,584 - ABID97_RS02065 0.61 +0.2 416,661 + ABID97_RS02065 0.74 -0.5 416,661 + ABID97_RS02065 0.74 +0.0 416,662 - ABID97_RS02065 0.75 +1.4 416,802 + -1.1 416,802 + +0.2 416,803 - -2.0 416,803 - +0.0 417,388 + ABID97_RS02075 0.57 -0.1 417,388 + ABID97_RS02075 0.57 -1.7 417,472 + ABID97_RS02075 0.75 -0.6 417,473 - ABID97_RS02075 0.75 -0.7 417,473 - ABID97_RS02075 0.75 -0.2 417,473 - ABID97_RS02075 0.75 -0.8 417,473 - ABID97_RS02075 0.75 +0.1 417,619 - +0.5 417,619 - -0.3 417,619 - -0.5 417,619 - -0.8 417,619 - +0.8 417,652 + -0.9 417,783 + +0.2 417,784 - -0.6 418,008 + -0.5 418,008 + -0.4 418,008 + -0.4 418,008 + -0.2 418,008 + -0.1 418,009 - -0.3 418,072 + -1.8 418,072 + -0.1 418,072 + -0.1 418,072 + -1.3 418,072 + -1.9 418,072 + -0.6 418,072 + -2.3 418,073 - -0.1
Or see this region's nucleotide sequence