Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00400

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00395 and ABID97_RS00400 are separated by 68 nucleotidesABID97_RS00400 and ABID97_RS00405 are separated by 13 nucleotides ABID97_RS00395: ABID97_RS00395 - ligase-associated DNA damage response exonuclease, at 88,891 to 89,943 _RS00395 ABID97_RS00400: ABID97_RS00400 - DUF3617 family protein, at 90,012 to 90,539 _RS00400 ABID97_RS00405: ABID97_RS00405 - NAD(+) synthase, at 90,553 to 92,637 _RS00405 Position (kb) 90 91Strain fitness (log2 ratio) -2 -1 0 1 2at 89.190 kb on - strand, within ABID97_RS00395at 89.606 kb on + strand, within ABID97_RS00395at 89.606 kb on + strand, within ABID97_RS00395at 89.606 kb on + strand, within ABID97_RS00395at 89.607 kb on - strand, within ABID97_RS00395at 89.607 kb on - strand, within ABID97_RS00395at 89.607 kb on - strand, within ABID97_RS00395at 89.607 kb on - strand, within ABID97_RS00395at 89.607 kb on - strand, within ABID97_RS00395at 89.607 kb on - strand, within ABID97_RS00395at 89.801 kb on + strand, within ABID97_RS00395at 89.801 kb on + strand, within ABID97_RS00395at 89.802 kb on - strand, within ABID97_RS00395at 89.802 kb on - strand, within ABID97_RS00395at 89.883 kb on - strandat 89.903 kb on + strandat 89.903 kb on + strandat 89.904 kb on - strandat 89.954 kb on - strandat 90.013 kb on + strandat 90.013 kb on + strandat 90.013 kb on + strandat 90.014 kb on - strandat 90.014 kb on - strandat 90.014 kb on - strandat 90.169 kb on + strand, within ABID97_RS00400at 90.169 kb on + strand, within ABID97_RS00400at 90.170 kb on - strand, within ABID97_RS00400at 90.170 kb on - strand, within ABID97_RS00400at 90.461 kb on - strand, within ABID97_RS00400at 90.544 kb on + strandat 90.544 kb on + strandat 90.544 kb on + strandat 90.545 kb on - strandat 90.714 kb on - strandat 90.756 kb on - strandat 90.872 kb on + strand, within ABID97_RS00405at 90.872 kb on + strand, within ABID97_RS00405at 90.872 kb on + strand, within ABID97_RS00405at 90.872 kb on + strand, within ABID97_RS00405at 90.872 kb on + strand, within ABID97_RS00405at 90.872 kb on + strand, within ABID97_RS00405at 90.873 kb on - strand, within ABID97_RS00405at 90.873 kb on - strand, within ABID97_RS00405at 90.873 kb on - strand, within ABID97_RS00405at 90.873 kb on - strand, within ABID97_RS00405at 90.873 kb on - strand, within ABID97_RS00405at 90.873 kb on - strand, within ABID97_RS00405at 90.875 kb on + strand, within ABID97_RS00405at 90.875 kb on + strand, within ABID97_RS00405at 90.875 kb on + strand, within ABID97_RS00405at 90.875 kb on + strand, within ABID97_RS00405at 90.876 kb on - strand, within ABID97_RS00405at 90.876 kb on - strand, within ABID97_RS00405at 90.876 kb on - strand, within ABID97_RS00405at 90.876 kb on - strand, within ABID97_RS00405at 90.876 kb on - strand, within ABID97_RS00405at 90.900 kb on - strand, within ABID97_RS00405at 91.118 kb on + strand, within ABID97_RS00405at 91.118 kb on + strand, within ABID97_RS00405at 91.118 kb on + strand, within ABID97_RS00405at 91.119 kb on - strand, within ABID97_RS00405at 91.119 kb on - strand, within ABID97_RS00405at 91.145 kb on + strand, within ABID97_RS00405at 91.145 kb on + strand, within ABID97_RS00405at 91.274 kb on + strand, within ABID97_RS00405

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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89,190 - ABID97_RS00395 0.28 +1.1
89,606 + ABID97_RS00395 0.68 -0.0
89,606 + ABID97_RS00395 0.68 -0.3
89,606 + ABID97_RS00395 0.68 -0.2
89,607 - ABID97_RS00395 0.68 -0.5
89,607 - ABID97_RS00395 0.68 -0.3
89,607 - ABID97_RS00395 0.68 -0.2
89,607 - ABID97_RS00395 0.68 -0.1
89,607 - ABID97_RS00395 0.68 -0.1
89,607 - ABID97_RS00395 0.68 -1.6
89,801 + ABID97_RS00395 0.86 -0.7
89,801 + ABID97_RS00395 0.86 -0.8
89,802 - ABID97_RS00395 0.87 -0.2
89,802 - ABID97_RS00395 0.87 -1.0
89,883 - +0.1
89,903 + -0.2
89,903 + +0.0
89,904 - -0.3
89,954 - -0.1
90,013 + +0.2
90,013 + -0.2
90,013 + -0.3
90,014 - +0.7
90,014 - +0.3
90,014 - -0.3
90,169 + ABID97_RS00400 0.30 -0.3
90,169 + ABID97_RS00400 0.30 -0.1
90,170 - ABID97_RS00400 0.30 -1.1
90,170 - ABID97_RS00400 0.30 -1.7
90,461 - ABID97_RS00400 0.85 -2.2
90,544 + -0.3
90,544 + +1.0
90,544 + -0.4
90,545 - +0.0
90,714 - +0.9
90,756 - -2.3
90,872 + ABID97_RS00405 0.15 -1.1
90,872 + ABID97_RS00405 0.15 -0.2
90,872 + ABID97_RS00405 0.15 -0.4
90,872 + ABID97_RS00405 0.15 +0.3
90,872 + ABID97_RS00405 0.15 -0.5
90,872 + ABID97_RS00405 0.15 -0.8
90,873 - ABID97_RS00405 0.15 -0.2
90,873 - ABID97_RS00405 0.15 -0.3
90,873 - ABID97_RS00405 0.15 -0.3
90,873 - ABID97_RS00405 0.15 -0.6
90,873 - ABID97_RS00405 0.15 -0.4
90,873 - ABID97_RS00405 0.15 -0.3
90,875 + ABID97_RS00405 0.15 +0.3
90,875 + ABID97_RS00405 0.15 -1.0
90,875 + ABID97_RS00405 0.15 +1.9
90,875 + ABID97_RS00405 0.15 +0.5
90,876 - ABID97_RS00405 0.15 -0.5
90,876 - ABID97_RS00405 0.15 -0.7
90,876 - ABID97_RS00405 0.15 +0.4
90,876 - ABID97_RS00405 0.15 +0.4
90,876 - ABID97_RS00405 0.15 -1.0
90,900 - ABID97_RS00405 0.17 -0.9
91,118 + ABID97_RS00405 0.27 -0.6
91,118 + ABID97_RS00405 0.27 -0.6
91,118 + ABID97_RS00405 0.27 -1.1
91,119 - ABID97_RS00405 0.27 -0.5
91,119 - ABID97_RS00405 0.27 -0.5
91,145 + ABID97_RS00405 0.28 -0.9
91,145 + ABID97_RS00405 0.28 +0.1
91,274 + ABID97_RS00405 0.35 -0.4

Or see this region's nucleotide sequence