Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS05930

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS05920 and RPSI07_RS05925 overlap by 4 nucleotidesRPSI07_RS05925 and RPSI07_RS05930 overlap by 4 nucleotidesRPSI07_RS05930 and RPSI07_RS05935 are separated by 225 nucleotidesRPSI07_RS05935 and RPSI07_RS05940 are separated by 413 nucleotides RPSI07_RS05920: RPSI07_RS05920 - type 4 fimbrial biogenesis transmembrane pilw-related protein (pilw), at 1,615,397 to 1,616,149 _RS05920 RPSI07_RS05925: RPSI07_RS05925 - type IV pilus modification protein PilV, at 1,616,146 to 1,616,682 _RS05925 RPSI07_RS05930: RPSI07_RS05930 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,616,679 to 1,617,338 _RS05930 RPSI07_RS05935: RPSI07_RS05935 - hypothetical protein, at 1,617,564 to 1,617,764 _RS05935 RPSI07_RS05940: RPSI07_RS05940 - hypothetical protein, at 1,618,178 to 1,618,525 _RS05940 Position (kb) 1616 1617 1618Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1615.698 kb on + strand, within RPSI07_RS05920at 1615.698 kb on + strand, within RPSI07_RS05920at 1615.698 kb on + strand, within RPSI07_RS05920at 1615.699 kb on - strand, within RPSI07_RS05920at 1615.699 kb on - strand, within RPSI07_RS05920at 1615.720 kb on + strand, within RPSI07_RS05920at 1615.720 kb on + strand, within RPSI07_RS05920at 1615.721 kb on - strand, within RPSI07_RS05920at 1615.721 kb on - strand, within RPSI07_RS05920at 1615.721 kb on - strand, within RPSI07_RS05920at 1615.721 kb on - strand, within RPSI07_RS05920at 1615.721 kb on - strand, within RPSI07_RS05920at 1615.721 kb on - strand, within RPSI07_RS05920at 1615.721 kb on - strand, within RPSI07_RS05920at 1615.770 kb on + strand, within RPSI07_RS05920at 1615.770 kb on + strand, within RPSI07_RS05920at 1615.771 kb on - strand, within RPSI07_RS05920at 1615.854 kb on + strand, within RPSI07_RS05920at 1615.855 kb on - strand, within RPSI07_RS05920at 1615.855 kb on - strand, within RPSI07_RS05920at 1615.861 kb on + strand, within RPSI07_RS05920at 1615.861 kb on + strand, within RPSI07_RS05920at 1615.861 kb on + strand, within RPSI07_RS05920at 1615.862 kb on - strand, within RPSI07_RS05920at 1615.862 kb on - strand, within RPSI07_RS05920at 1615.894 kb on + strand, within RPSI07_RS05920at 1615.895 kb on - strand, within RPSI07_RS05920at 1615.895 kb on - strand, within RPSI07_RS05920at 1615.895 kb on - strand, within RPSI07_RS05920at 1615.917 kb on + strand, within RPSI07_RS05920at 1616.159 kb on + strandat 1616.159 kb on + strandat 1616.159 kb on + strandat 1616.159 kb on + strandat 1616.160 kb on - strandat 1616.228 kb on + strand, within RPSI07_RS05925at 1616.228 kb on + strand, within RPSI07_RS05925at 1616.228 kb on + strand, within RPSI07_RS05925at 1616.228 kb on + strand, within RPSI07_RS05925at 1616.228 kb on + strand, within RPSI07_RS05925at 1616.228 kb on + strand, within RPSI07_RS05925at 1616.228 kb on + strand, within RPSI07_RS05925at 1616.228 kb on + strand, within RPSI07_RS05925at 1616.228 kb on + strand, within RPSI07_RS05925at 1616.228 kb on + strand, within RPSI07_RS05925at 1616.228 kb on + strand, within RPSI07_RS05925at 1616.228 kb on + strand, within RPSI07_RS05925at 1616.228 kb on + strand, within RPSI07_RS05925at 1616.229 kb on + strand, within RPSI07_RS05925at 1616.229 kb on - strand, within RPSI07_RS05925at 1616.229 kb on - strand, within RPSI07_RS05925at 1616.229 kb on - strand, within RPSI07_RS05925at 1616.229 kb on - strand, within RPSI07_RS05925at 1616.229 kb on - strand, within RPSI07_RS05925at 1616.229 kb on - strand, within RPSI07_RS05925at 1616.229 kb on - strand, within RPSI07_RS05925at 1616.229 kb on - strand, within RPSI07_RS05925at 1616.229 kb on - strand, within RPSI07_RS05925at 1616.229 kb on - strand, within RPSI07_RS05925at 1616.229 kb on - strand, within RPSI07_RS05925at 1616.306 kb on + strand, within RPSI07_RS05925at 1616.307 kb on - strand, within RPSI07_RS05925at 1616.307 kb on - strand, within RPSI07_RS05925at 1616.354 kb on + strand, within RPSI07_RS05925at 1616.354 kb on + strand, within RPSI07_RS05925at 1616.355 kb on - strand, within RPSI07_RS05925at 1616.355 kb on - strand, within RPSI07_RS05925at 1616.833 kb on + strand, within RPSI07_RS05930at 1616.833 kb on + strand, within RPSI07_RS05930at 1616.833 kb on + strand, within RPSI07_RS05930at 1616.833 kb on + strand, within RPSI07_RS05930at 1616.834 kb on - strand, within RPSI07_RS05930at 1616.834 kb on - strand, within RPSI07_RS05930at 1616.834 kb on - strand, within RPSI07_RS05930at 1616.955 kb on + strand, within RPSI07_RS05930at 1616.955 kb on + strand, within RPSI07_RS05930at 1616.955 kb on + strand, within RPSI07_RS05930at 1616.956 kb on - strand, within RPSI07_RS05930at 1616.956 kb on - strand, within RPSI07_RS05930at 1617.101 kb on + strand, within RPSI07_RS05930at 1617.101 kb on + strand, within RPSI07_RS05930at 1617.101 kb on + strand, within RPSI07_RS05930at 1617.102 kb on - strand, within RPSI07_RS05930at 1617.194 kb on + strand, within RPSI07_RS05930at 1617.195 kb on - strand, within RPSI07_RS05930at 1617.195 kb on - strand, within RPSI07_RS05930at 1617.232 kb on + strand, within RPSI07_RS05930at 1617.256 kb on + strand, within RPSI07_RS05930at 1617.257 kb on - strand, within RPSI07_RS05930at 1617.257 kb on - strand, within RPSI07_RS05930at 1617.257 kb on - strand, within RPSI07_RS05930at 1617.357 kb on + strandat 1617.357 kb on + strandat 1617.357 kb on + strandat 1617.357 kb on + strandat 1617.358 kb on - strandat 1617.358 kb on - strandat 1617.358 kb on - strandat 1617.361 kb on + strandat 1617.361 kb on + strandat 1617.362 kb on - strandat 1617.369 kb on + strandat 1617.369 kb on + strandat 1617.369 kb on + strandat 1617.369 kb on + strandat 1617.369 kb on + strandat 1617.369 kb on + strandat 1617.369 kb on + strandat 1617.369 kb on + strandat 1617.370 kb on - strandat 1617.370 kb on - strandat 1617.370 kb on - strandat 1617.370 kb on - strandat 1617.370 kb on - strandat 1617.370 kb on - strandat 1617.370 kb on - strandat 1617.370 kb on - strandat 1617.370 kb on - strandat 1617.372 kb on - strandat 1617.372 kb on - strandat 1617.388 kb on + strandat 1617.415 kb on + strandat 1617.417 kb on + strandat 1617.417 kb on + strandat 1617.487 kb on - strandat 1617.565 kb on + strandat 1617.566 kb on - strandat 1617.757 kb on + strandat 1617.757 kb on + strandat 1617.757 kb on + strandat 1617.757 kb on + strandat 1617.757 kb on + strandat 1617.758 kb on - strandat 1617.758 kb on - strandat 1617.758 kb on - strandat 1617.758 kb on - strandat 1617.758 kb on - strandat 1617.758 kb on - strandat 1617.758 kb on - strandat 1617.758 kb on - strandat 1617.758 kb on - strandat 1617.758 kb on - strandat 1617.844 kb on + strandat 1617.845 kb on - strandat 1618.046 kb on + strandat 1618.175 kb on + strandat 1618.175 kb on + strandat 1618.175 kb on + strandat 1618.176 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
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1,615,698 + RPSI07_RS05920 0.40 +0.3
1,615,698 + RPSI07_RS05920 0.40 +0.3
1,615,698 + RPSI07_RS05920 0.40 +2.2
1,615,699 - RPSI07_RS05920 0.40 +0.7
1,615,699 - RPSI07_RS05920 0.40 +1.7
1,615,720 + RPSI07_RS05920 0.43 +0.1
1,615,720 + RPSI07_RS05920 0.43 +0.0
1,615,721 - RPSI07_RS05920 0.43 +0.0
1,615,721 - RPSI07_RS05920 0.43 +0.0
1,615,721 - RPSI07_RS05920 0.43 +2.7
1,615,721 - RPSI07_RS05920 0.43 -0.3
1,615,721 - RPSI07_RS05920 0.43 -0.2
1,615,721 - RPSI07_RS05920 0.43 -0.4
1,615,721 - RPSI07_RS05920 0.43 -0.0
1,615,770 + RPSI07_RS05920 0.50 -0.6
1,615,770 + RPSI07_RS05920 0.50 -1.6
1,615,771 - RPSI07_RS05920 0.50 -1.2
1,615,854 + RPSI07_RS05920 0.61 +0.5
1,615,855 - RPSI07_RS05920 0.61 -2.6
1,615,855 - RPSI07_RS05920 0.61 -1.6
1,615,861 + RPSI07_RS05920 0.62 +1.1
1,615,861 + RPSI07_RS05920 0.62 -1.1
1,615,861 + RPSI07_RS05920 0.62 -1.0
1,615,862 - RPSI07_RS05920 0.62 -1.6
1,615,862 - RPSI07_RS05920 0.62 +0.7
1,615,894 + RPSI07_RS05920 0.66 -1.1
1,615,895 - RPSI07_RS05920 0.66 +0.7
1,615,895 - RPSI07_RS05920 0.66 -1.3
1,615,895 - RPSI07_RS05920 0.66 -2.2
1,615,917 + RPSI07_RS05920 0.69 -1.3
1,616,159 + -0.1
1,616,159 + -0.3
1,616,159 + +0.7
1,616,159 + +0.1
1,616,160 - +0.7
1,616,228 + RPSI07_RS05925 0.15 +1.5
1,616,228 + RPSI07_RS05925 0.15 +0.6
1,616,228 + RPSI07_RS05925 0.15 -0.0
1,616,228 + RPSI07_RS05925 0.15 +0.0
1,616,228 + RPSI07_RS05925 0.15 -0.3
1,616,228 + RPSI07_RS05925 0.15 +2.0
1,616,228 + RPSI07_RS05925 0.15 -1.3
1,616,228 + RPSI07_RS05925 0.15 -0.5
1,616,228 + RPSI07_RS05925 0.15 +0.7
1,616,228 + RPSI07_RS05925 0.15 +2.0
1,616,228 + RPSI07_RS05925 0.15 -0.5
1,616,228 + RPSI07_RS05925 0.15 +1.3
1,616,228 + RPSI07_RS05925 0.15 -0.7
1,616,229 + RPSI07_RS05925 0.15 +0.1
1,616,229 - RPSI07_RS05925 0.15 +1.9
1,616,229 - RPSI07_RS05925 0.15 -0.8
1,616,229 - RPSI07_RS05925 0.15 +0.8
1,616,229 - RPSI07_RS05925 0.15 +0.1
1,616,229 - RPSI07_RS05925 0.15 -0.6
1,616,229 - RPSI07_RS05925 0.15 -0.1
1,616,229 - RPSI07_RS05925 0.15 -0.5
1,616,229 - RPSI07_RS05925 0.15 +0.3
1,616,229 - RPSI07_RS05925 0.15 +0.4
1,616,229 - RPSI07_RS05925 0.15 +1.9
1,616,229 - RPSI07_RS05925 0.15 -1.7
1,616,306 + RPSI07_RS05925 0.30 +0.7
1,616,307 - RPSI07_RS05925 0.30 +0.8
1,616,307 - RPSI07_RS05925 0.30 +0.1
1,616,354 + RPSI07_RS05925 0.39 -0.9
1,616,354 + RPSI07_RS05925 0.39 +0.4
1,616,355 - RPSI07_RS05925 0.39 +0.2
1,616,355 - RPSI07_RS05925 0.39 +0.5
1,616,833 + RPSI07_RS05930 0.23 +0.5
1,616,833 + RPSI07_RS05930 0.23 +0.3
1,616,833 + RPSI07_RS05930 0.23 -0.9
1,616,833 + RPSI07_RS05930 0.23 -0.0
1,616,834 - RPSI07_RS05930 0.23 -0.5
1,616,834 - RPSI07_RS05930 0.23 -0.5
1,616,834 - RPSI07_RS05930 0.23 -0.1
1,616,955 + RPSI07_RS05930 0.42 -0.7
1,616,955 + RPSI07_RS05930 0.42 -0.4
1,616,955 + RPSI07_RS05930 0.42 -0.3
1,616,956 - RPSI07_RS05930 0.42 -0.1
1,616,956 - RPSI07_RS05930 0.42 +0.2
1,617,101 + RPSI07_RS05930 0.64 +0.0
1,617,101 + RPSI07_RS05930 0.64 -1.6
1,617,101 + RPSI07_RS05930 0.64 +0.5
1,617,102 - RPSI07_RS05930 0.64 -0.7
1,617,194 + RPSI07_RS05930 0.78 +1.0
1,617,195 - RPSI07_RS05930 0.78 +0.7
1,617,195 - RPSI07_RS05930 0.78 -0.9
1,617,232 + RPSI07_RS05930 0.84 -0.9
1,617,256 + RPSI07_RS05930 0.87 +0.1
1,617,257 - RPSI07_RS05930 0.88 -2.7
1,617,257 - RPSI07_RS05930 0.88 -0.3
1,617,257 - RPSI07_RS05930 0.88 -0.7
1,617,357 + -0.2
1,617,357 + +0.1
1,617,357 + +0.3
1,617,357 + +0.2
1,617,358 - -1.0
1,617,358 - -0.7
1,617,358 - -0.4
1,617,361 + -0.5
1,617,361 + +0.3
1,617,362 - -0.3
1,617,369 + +0.4
1,617,369 + +1.0
1,617,369 + +1.1
1,617,369 + +1.3
1,617,369 + -1.1
1,617,369 + -0.3
1,617,369 + -0.3
1,617,369 + -0.2
1,617,370 - +0.2
1,617,370 - -0.8
1,617,370 - -0.2
1,617,370 - -0.4
1,617,370 - +4.4
1,617,370 - +2.7
1,617,370 - -0.1
1,617,370 - +0.1
1,617,370 - -1.3
1,617,372 - -0.4
1,617,372 - +3.0
1,617,388 + -0.1
1,617,415 + +0.7
1,617,417 + -1.9
1,617,417 + -0.3
1,617,487 - -0.3
1,617,565 + +0.0
1,617,566 - +0.1
1,617,757 + -0.7
1,617,757 + +0.7
1,617,757 + +1.1
1,617,757 + +0.3
1,617,757 + -0.4
1,617,758 - -0.3
1,617,758 - -0.9
1,617,758 - +0.3
1,617,758 - -1.0
1,617,758 - +0.6
1,617,758 - -0.7
1,617,758 - -0.3
1,617,758 - -1.6
1,617,758 - -0.3
1,617,758 - -2.3
1,617,844 + +0.5
1,617,845 - -0.6
1,618,046 + -0.0
1,618,175 + -0.9
1,618,175 + -0.3
1,618,175 + -0.4
1,618,176 - -2.1

Or see this region's nucleotide sequence