Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0720

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0719 and Echvi_0720 are separated by 255 nucleotidesEchvi_0720 and Echvi_0721 are separated by 274 nucleotidesEchvi_0721 and Echvi_0722 are separated by 5 nucleotides Echvi_0719: Echvi_0719 - pseudouridine synthase, at 810,728 to 811,873 _0719 Echvi_0720: Echvi_0720 - hypothetical protein, at 812,129 to 812,263 _0720 Echvi_0721: Echvi_0721 - Uncharacterized protein conserved in bacteria, at 812,538 to 812,819 _0721 Echvi_0722: Echvi_0722 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes, at 812,825 to 814,201 _0722 Position (kb) 812 813Strain fitness (log2 ratio) -2 -1 0 1 2 3at 811.895 kb on - strandat 811.897 kb on - strandat 811.906 kb on + strandat 811.907 kb on - strandat 811.913 kb on - strandat 811.944 kb on + strandat 811.964 kb on - strandat 812.056 kb on - strandat 812.221 kb on + strand, within Echvi_0720at 812.222 kb on - strand, within Echvi_0720at 812.268 kb on + strandat 812.270 kb on + strandat 812.270 kb on + strandat 812.351 kb on - strandat 812.372 kb on - strandat 812.411 kb on - strandat 812.411 kb on - strandat 812.514 kb on + strandat 812.524 kb on + strandat 812.525 kb on - strandat 812.537 kb on + strandat 812.537 kb on + strandat 812.538 kb on - strandat 812.607 kb on + strand, within Echvi_0721at 812.642 kb on - strand, within Echvi_0721at 812.746 kb on - strand, within Echvi_0721at 812.781 kb on + strand, within Echvi_0721at 812.817 kb on + strandat 812.877 kb on + strandat 813.172 kb on + strand, within Echvi_0722at 813.173 kb on - strand, within Echvi_0722at 813.236 kb on - strand, within Echvi_0722at 813.240 kb on + strand, within Echvi_0722

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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811,895 - -1.9
811,897 - -0.5
811,906 + -0.9
811,907 - +0.7
811,913 - -0.5
811,944 + +1.3
811,964 - +0.7
812,056 - +0.3
812,221 + Echvi_0720 0.68 -0.8
812,222 - Echvi_0720 0.69 -0.5
812,268 + -0.1
812,270 + -0.8
812,270 + -2.3
812,351 - +0.1
812,372 - +0.1
812,411 - +3.1
812,411 - +0.7
812,514 + -0.4
812,524 + +0.3
812,525 - +0.8
812,537 + -0.8
812,537 + -0.8
812,538 - +0.4
812,607 + Echvi_0721 0.24 -0.2
812,642 - Echvi_0721 0.37 +0.3
812,746 - Echvi_0721 0.74 -1.2
812,781 + Echvi_0721 0.86 +0.4
812,817 + -1.2
812,877 + +0.0
813,172 + Echvi_0722 0.25 +0.1
813,173 - Echvi_0722 0.25 +0.8
813,236 - Echvi_0722 0.30 -0.0
813,240 + Echvi_0722 0.30 -0.8

Or see this region's nucleotide sequence