Experiment: R2A with Cisplatin 0.0016 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0838 and Atu0839 are separated by 310 nucleotides Atu0839 and Atu0840 are separated by 1 nucleotides
Atu0838: Atu0838 - MFS permease, at 836,902 to 838,425
Atu0838
Atu0839: Atu0839 - hypothetical protein, at 838,736 to 839,731
Atu0839
Atu0840: Atu0840 - ATP-dependent DNA ligase, at 839,733 to 841,358
Atu0840
Position (kb) 838
839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 837.826 kb on - strand, within Atu0838 at 837.839 kb on - strand, within Atu0838 at 837.906 kb on + strand, within Atu0838 at 837.906 kb on + strand, within Atu0838 at 837.960 kb on - strand, within Atu0838 at 838.020 kb on + strand, within Atu0838 at 838.028 kb on - strand, within Atu0838 at 838.063 kb on + strand, within Atu0838 at 838.069 kb on - strand, within Atu0838 at 838.073 kb on - strand, within Atu0838 at 838.254 kb on + strand, within Atu0838 at 838.262 kb on - strand, within Atu0838 at 838.279 kb on + strand at 838.444 kb on + strand at 838.463 kb on - strand at 838.594 kb on + strand at 838.594 kb on + strand at 838.712 kb on - strand at 838.827 kb on - strand at 838.843 kb on + strand, within Atu0839 at 838.944 kb on + strand, within Atu0839 at 838.952 kb on - strand, within Atu0839 at 838.956 kb on + strand, within Atu0839 at 838.956 kb on - strand, within Atu0839 at 838.997 kb on + strand, within Atu0839 at 839.000 kb on - strand, within Atu0839 at 839.011 kb on - strand, within Atu0839 at 839.090 kb on + strand, within Atu0839 at 839.098 kb on + strand, within Atu0839 at 839.098 kb on + strand, within Atu0839 at 839.106 kb on - strand, within Atu0839 at 839.106 kb on - strand, within Atu0839 at 839.139 kb on + strand, within Atu0839 at 839.192 kb on + strand, within Atu0839 at 839.202 kb on + strand, within Atu0839 at 839.212 kb on - strand, within Atu0839 at 839.238 kb on + strand, within Atu0839 at 839.382 kb on - strand, within Atu0839 at 839.421 kb on - strand, within Atu0839 at 839.421 kb on - strand, within Atu0839 at 839.508 kb on + strand, within Atu0839 at 839.557 kb on + strand, within Atu0839 at 839.562 kb on + strand, within Atu0839 at 839.672 kb on - strand at 839.728 kb on - strand at 839.740 kb on - strand at 839.740 kb on - strand at 839.761 kb on + strand at 839.814 kb on - strand at 839.884 kb on + strand at 839.892 kb on - strand at 839.928 kb on + strand, within Atu0840 at 839.929 kb on - strand, within Atu0840 at 839.934 kb on + strand, within Atu0840 at 839.975 kb on - strand, within Atu0840 at 840.034 kb on - strand, within Atu0840 at 840.076 kb on + strand, within Atu0840 at 840.087 kb on - strand, within Atu0840 at 840.128 kb on - strand, within Atu0840 at 840.258 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.277 kb on - strand, within Atu0840 at 840.277 kb on - strand, within Atu0840 at 840.404 kb on + strand, within Atu0840 at 840.409 kb on - strand, within Atu0840 at 840.526 kb on - strand, within Atu0840 at 840.690 kb on - strand, within Atu0840 at 840.725 kb on + strand, within Atu0840 at 840.730 kb on + strand, within Atu0840
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.0016 mM remove 837,826 - Atu0838 0.61 +0.3 837,839 - Atu0838 0.61 +0.2 837,906 + Atu0838 0.66 +0.3 837,906 + Atu0838 0.66 -0.6 837,960 - Atu0838 0.69 -0.0 838,020 + Atu0838 0.73 -0.2 838,028 - Atu0838 0.74 -0.3 838,063 + Atu0838 0.76 -1.2 838,069 - Atu0838 0.77 +0.2 838,073 - Atu0838 0.77 -0.0 838,254 + Atu0838 0.89 -0.1 838,262 - Atu0838 0.89 +0.4 838,279 + -0.0 838,444 + +0.6 838,463 - +0.1 838,594 + +1.6 838,594 + +0.5 838,712 - -0.4 838,827 - -1.1 838,843 + Atu0839 0.11 -1.2 838,944 + Atu0839 0.21 -0.3 838,952 - Atu0839 0.22 -0.9 838,956 + Atu0839 0.22 -1.5 838,956 - Atu0839 0.22 -1.3 838,997 + Atu0839 0.26 -2.5 839,000 - Atu0839 0.27 -1.8 839,011 - Atu0839 0.28 -1.5 839,090 + Atu0839 0.36 -0.2 839,098 + Atu0839 0.36 -1.1 839,098 + Atu0839 0.36 -2.0 839,106 - Atu0839 0.37 -1.8 839,106 - Atu0839 0.37 -1.2 839,139 + Atu0839 0.40 -1.3 839,192 + Atu0839 0.46 -1.1 839,202 + Atu0839 0.47 -0.2 839,212 - Atu0839 0.48 -2.5 839,238 + Atu0839 0.50 -2.0 839,382 - Atu0839 0.65 -0.5 839,421 - Atu0839 0.69 -1.3 839,421 - Atu0839 0.69 -1.8 839,508 + Atu0839 0.78 -0.7 839,557 + Atu0839 0.82 -2.3 839,562 + Atu0839 0.83 -0.6 839,672 - -1.5 839,728 - -0.7 839,740 - -0.0 839,740 - -0.9 839,761 + -2.2 839,814 - -1.2 839,884 + -1.0 839,892 - -1.8 839,928 + Atu0840 0.12 -0.7 839,929 - Atu0840 0.12 -1.7 839,934 + Atu0840 0.12 -1.3 839,975 - Atu0840 0.15 -1.7 840,034 - Atu0840 0.19 -2.3 840,076 + Atu0840 0.21 -0.9 840,087 - Atu0840 0.22 -1.0 840,128 - Atu0840 0.24 -0.6 840,258 + Atu0840 0.32 -0.9 840,269 + Atu0840 0.33 -1.4 840,269 + Atu0840 0.33 -0.7 840,269 + Atu0840 0.33 -1.3 840,269 + Atu0840 0.33 -0.4 840,269 + Atu0840 0.33 -1.7 840,269 + Atu0840 0.33 -1.0 840,269 + Atu0840 0.33 -0.9 840,269 + Atu0840 0.33 -1.4 840,269 + Atu0840 0.33 -0.3 840,277 - Atu0840 0.33 -1.1 840,277 - Atu0840 0.33 -2.1 840,404 + Atu0840 0.41 -1.7 840,409 - Atu0840 0.42 -0.7 840,526 - Atu0840 0.49 -3.0 840,690 - Atu0840 0.59 -1.1 840,725 + Atu0840 0.61 -2.2 840,730 + Atu0840 0.61 -1.3
Or see this region's nucleotide sequence