Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28230

Experiment: V2_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28220 and ABID97_RS28225 overlap by 4 nucleotidesABID97_RS28225 and ABID97_RS28230 are separated by 124 nucleotidesABID97_RS28230 and ABID97_RS28235 are separated by 1 nucleotidesABID97_RS28235 and ABID97_RS28240 are separated by 17 nucleotidesABID97_RS28240 and ABID97_RS28245 are separated by 22 nucleotides ABID97_RS28220: ABID97_RS28220 - SDR family oxidoreductase, at 565,473 to 566,291 _RS28220 ABID97_RS28225: ABID97_RS28225 - PaaI family thioesterase, at 566,288 to 566,722 _RS28225 ABID97_RS28230: ABID97_RS28230 - lipid-transfer protein, at 566,847 to 568,040 _RS28230 ABID97_RS28235: ABID97_RS28235 - MaoC family dehydratase N-terminal domain-containing protein, at 568,042 to 568,485 _RS28235 ABID97_RS28240: ABID97_RS28240 - MaoC family dehydratase, at 568,503 to 568,931 _RS28240 ABID97_RS28245: ABID97_RS28245 - SDR family NAD(P)-dependent oxidoreductase, at 568,954 to 569,796 _RS28245 Position (kb) 566 567 568 569Strain fitness (log2 ratio) -1 0 1at 566.187 kb on + strand, within ABID97_RS28220at 566.855 kb on + strandat 567.331 kb on - strand, within ABID97_RS28230

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_100
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566,187 + ABID97_RS28220 0.87 -0.9
566,855 + +0.9
567,331 - ABID97_RS28230 0.41 -0.2

Or see this region's nucleotide sequence