Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26095

Experiment: V2_100

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS26090 and ABID97_RS26095 are separated by 142 nucleotidesABID97_RS26095 and ABID97_RS26100 are separated by 10 nucleotides ABID97_RS26090: ABID97_RS26090 - homoserine O-acetyltransferase, at 142,215 to 143,396 _RS26090 ABID97_RS26095: ABID97_RS26095 - SRPBCC family protein, at 143,539 to 143,988 _RS26095 ABID97_RS26100: ABID97_RS26100 - LysR family transcriptional regulator, at 143,999 to 144,895 _RS26100 Position (kb) 143 144Strain fitness (log2 ratio) -1 0 1 2at 143.148 kb on + strand, within ABID97_RS26090at 143.220 kb on - strand, within ABID97_RS26090at 143.302 kb on - strandat 143.302 kb on - strandat 143.395 kb on - strandat 143.599 kb on + strand, within ABID97_RS26095at 143.733 kb on + strand, within ABID97_RS26095at 143.924 kb on - strand, within ABID97_RS26095at 144.387 kb on + strand, within ABID97_RS26100

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction V2_100
remove
143,148 + ABID97_RS26090 0.79 -0.6
143,220 - ABID97_RS26090 0.85 -0.8
143,302 - +0.6
143,302 - +0.2
143,395 - +1.4
143,599 + ABID97_RS26095 0.13 -1.5
143,733 + ABID97_RS26095 0.43 +0.2
143,924 - ABID97_RS26095 0.86 +0.3
144,387 + ABID97_RS26100 0.43 +2.3

Or see this region's nucleotide sequence