Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17965

Experiment: V2_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17960 and ABID97_RS17965 overlap by 4 nucleotidesABID97_RS17965 and ABID97_RS17970 overlap by 4 nucleotidesABID97_RS17970 and ABID97_RS17975 are separated by 15 nucleotides ABID97_RS17960: ABID97_RS17960 - pyridoxal phosphate-dependent aminotransferase, at 3,710,964 to 3,712,160 _RS17960 ABID97_RS17965: ABID97_RS17965 - YbgC/FadM family acyl-CoA thioesterase, at 3,712,157 to 3,712,615 _RS17965 ABID97_RS17970: ABID97_RS17970 - protein TolQ, at 3,712,612 to 3,713,334 _RS17970 ABID97_RS17975: ABID97_RS17975 - biopolymer transporter ExbD, at 3,713,350 to 3,713,787 _RS17975 Position (kb) 3712 3713Strain fitness (log2 ratio) -1 0 1 2 3at 3711.162 kb on + strand, within ABID97_RS17960at 3711.346 kb on - strand, within ABID97_RS17960at 3711.346 kb on - strand, within ABID97_RS17960at 3711.790 kb on - strand, within ABID97_RS17960at 3711.933 kb on + strand, within ABID97_RS17960at 3711.934 kb on - strand, within ABID97_RS17960at 3711.934 kb on - strand, within ABID97_RS17960at 3711.934 kb on - strand, within ABID97_RS17960at 3712.163 kb on + strandat 3712.220 kb on + strand, within ABID97_RS17965at 3712.221 kb on - strand, within ABID97_RS17965at 3712.221 kb on - strand, within ABID97_RS17965at 3712.221 kb on - strand, within ABID97_RS17965at 3712.221 kb on - strand, within ABID97_RS17965at 3712.229 kb on + strand, within ABID97_RS17965at 3712.229 kb on + strand, within ABID97_RS17965at 3712.230 kb on - strand, within ABID97_RS17965at 3712.230 kb on - strand, within ABID97_RS17965at 3712.346 kb on + strand, within ABID97_RS17965at 3712.346 kb on + strand, within ABID97_RS17965at 3712.422 kb on + strand, within ABID97_RS17965at 3712.562 kb on - strand, within ABID97_RS17965at 3712.562 kb on - strand, within ABID97_RS17965at 3712.730 kb on - strand, within ABID97_RS17970at 3712.883 kb on - strand, within ABID97_RS17970at 3713.029 kb on + strand, within ABID97_RS17970at 3713.239 kb on + strand, within ABID97_RS17970at 3713.239 kb on + strand, within ABID97_RS17970at 3713.240 kb on - strand, within ABID97_RS17970

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_100
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3,711,162 + ABID97_RS17960 0.17 -1.0
3,711,346 - ABID97_RS17960 0.32 -0.1
3,711,346 - ABID97_RS17960 0.32 -0.3
3,711,790 - ABID97_RS17960 0.69 +1.0
3,711,933 + ABID97_RS17960 0.81 +0.9
3,711,934 - ABID97_RS17960 0.81 -0.8
3,711,934 - ABID97_RS17960 0.81 -0.3
3,711,934 - ABID97_RS17960 0.81 -0.0
3,712,163 + +2.6
3,712,220 + ABID97_RS17965 0.14 -0.6
3,712,221 - ABID97_RS17965 0.14 +1.4
3,712,221 - ABID97_RS17965 0.14 -0.7
3,712,221 - ABID97_RS17965 0.14 +2.2
3,712,221 - ABID97_RS17965 0.14 +0.4
3,712,229 + ABID97_RS17965 0.16 +0.5
3,712,229 + ABID97_RS17965 0.16 -0.4
3,712,230 - ABID97_RS17965 0.16 -0.9
3,712,230 - ABID97_RS17965 0.16 +0.4
3,712,346 + ABID97_RS17965 0.41 +0.0
3,712,346 + ABID97_RS17965 0.41 +0.6
3,712,422 + ABID97_RS17965 0.58 -1.2
3,712,562 - ABID97_RS17965 0.88 +2.9
3,712,562 - ABID97_RS17965 0.88 -1.2
3,712,730 - ABID97_RS17970 0.16 +3.3
3,712,883 - ABID97_RS17970 0.37 +3.7
3,713,029 + ABID97_RS17970 0.58 +3.4
3,713,239 + ABID97_RS17970 0.87 +2.6
3,713,239 + ABID97_RS17970 0.87 +2.8
3,713,240 - ABID97_RS17970 0.87 +2.4

Or see this region's nucleotide sequence