Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12560

Experiment: V2_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12550 and ABID97_RS12555 are separated by 114 nucleotidesABID97_RS12555 and ABID97_RS12560 are separated by 68 nucleotidesABID97_RS12560 and ABID97_RS12565 are separated by 446 nucleotides ABID97_RS12550: ABID97_RS12550 - alpha/beta hydrolase, at 2,605,398 to 2,606,405 _RS12550 ABID97_RS12555: ABID97_RS12555 - MarR family transcriptional regulator, at 2,606,520 to 2,606,996 _RS12555 ABID97_RS12560: ABID97_RS12560 - hypothetical protein, at 2,607,065 to 2,608,540 _RS12560 ABID97_RS12565: ABID97_RS12565 - beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein, at 2,608,987 to 2,610,036 _RS12565 Position (kb) 2607 2608 2609Strain fitness (log2 ratio) -2 -1 0 1at 2606.182 kb on + strand, within ABID97_RS12550at 2606.182 kb on + strand, within ABID97_RS12550at 2606.183 kb on - strand, within ABID97_RS12550at 2606.185 kb on + strand, within ABID97_RS12550at 2606.837 kb on - strand, within ABID97_RS12555at 2606.878 kb on + strand, within ABID97_RS12555at 2606.879 kb on - strand, within ABID97_RS12555at 2606.908 kb on + strand, within ABID97_RS12555at 2608.065 kb on + strand, within ABID97_RS12560at 2608.065 kb on + strand, within ABID97_RS12560at 2608.066 kb on - strand, within ABID97_RS12560at 2608.066 kb on - strand, within ABID97_RS12560at 2608.941 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_100
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2,606,182 + ABID97_RS12550 0.78 -1.2
2,606,182 + ABID97_RS12550 0.78 -0.0
2,606,183 - ABID97_RS12550 0.78 +0.1
2,606,185 + ABID97_RS12550 0.78 +1.2
2,606,837 - ABID97_RS12555 0.66 -0.6
2,606,878 + ABID97_RS12555 0.75 -0.8
2,606,879 - ABID97_RS12555 0.75 -0.4
2,606,908 + ABID97_RS12555 0.81 +1.5
2,608,065 + ABID97_RS12560 0.68 +1.3
2,608,065 + ABID97_RS12560 0.68 +1.3
2,608,066 - ABID97_RS12560 0.68 -0.0
2,608,066 - ABID97_RS12560 0.68 -1.4
2,608,941 + -2.0

Or see this region's nucleotide sequence