Experiment: V2_100
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12550 and ABID97_RS12555 are separated by 114 nucleotides ABID97_RS12555 and ABID97_RS12560 are separated by 68 nucleotides ABID97_RS12560 and ABID97_RS12565 are separated by 446 nucleotides
ABID97_RS12550: ABID97_RS12550 - alpha/beta hydrolase, at 2,605,398 to 2,606,405
_RS12550
ABID97_RS12555: ABID97_RS12555 - MarR family transcriptional regulator, at 2,606,520 to 2,606,996
_RS12555
ABID97_RS12560: ABID97_RS12560 - hypothetical protein, at 2,607,065 to 2,608,540
_RS12560
ABID97_RS12565: ABID97_RS12565 - beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein, at 2,608,987 to 2,610,036
_RS12565
Position (kb)
2607
2608
2609 Strain fitness (log2 ratio)
-2
-1
0
1 at 2606.182 kb on + strand, within ABID97_RS12550 at 2606.182 kb on + strand, within ABID97_RS12550 at 2606.183 kb on - strand, within ABID97_RS12550 at 2606.185 kb on + strand, within ABID97_RS12550 at 2606.837 kb on - strand, within ABID97_RS12555 at 2606.878 kb on + strand, within ABID97_RS12555 at 2606.879 kb on - strand, within ABID97_RS12555 at 2606.908 kb on + strand, within ABID97_RS12555 at 2608.065 kb on + strand, within ABID97_RS12560 at 2608.065 kb on + strand, within ABID97_RS12560 at 2608.066 kb on - strand, within ABID97_RS12560 at 2608.066 kb on - strand, within ABID97_RS12560 at 2608.941 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction V2_100 remove 2,606,182 + ABID97_RS12550 0.78 -1.2 2,606,182 + ABID97_RS12550 0.78 -0.0 2,606,183 - ABID97_RS12550 0.78 +0.1 2,606,185 + ABID97_RS12550 0.78 +1.2 2,606,837 - ABID97_RS12555 0.66 -0.6 2,606,878 + ABID97_RS12555 0.75 -0.8 2,606,879 - ABID97_RS12555 0.75 -0.4 2,606,908 + ABID97_RS12555 0.81 +1.5 2,608,065 + ABID97_RS12560 0.68 +1.3 2,608,065 + ABID97_RS12560 0.68 +1.3 2,608,066 - ABID97_RS12560 0.68 -0.0 2,608,066 - ABID97_RS12560 0.68 -1.4 2,608,941 + -2.0
Or see this region's nucleotide sequence