Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08995

Experiment: V2_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08990 and ABID97_RS08995 are separated by 128 nucleotidesABID97_RS08995 and ABID97_RS09000 are separated by 22 nucleotides ABID97_RS08990: ABID97_RS08990 - DUF2235 domain-containing protein, at 1,885,676 to 1,887,814 _RS08990 ABID97_RS08995: ABID97_RS08995 - type VI secretion system protein TssL, long form, at 1,887,943 to 1,889,295 _RS08995 ABID97_RS09000: ABID97_RS09000 - type VI secretion system membrane subunit TssM, at 1,889,318 to 1,893,508 _RS09000 Position (kb) 1887 1888 1889 1890Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1887.319 kb on + strand, within ABID97_RS08990at 1887.495 kb on - strand, within ABID97_RS08990at 1887.495 kb on - strand, within ABID97_RS08990at 1887.495 kb on - strand, within ABID97_RS08990at 1888.183 kb on + strandat 1888.183 kb on + strand, within ABID97_RS08995at 1888.291 kb on + strand, within ABID97_RS08995at 1888.493 kb on - strand, within ABID97_RS08995at 1889.259 kb on + strandat 1889.658 kb on - strandat 1889.723 kb on + strandat 1889.871 kb on - strand, within ABID97_RS09000at 1889.871 kb on - strand, within ABID97_RS09000at 1889.877 kb on - strand, within ABID97_RS09000at 1889.891 kb on + strand, within ABID97_RS09000

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_100
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1,887,319 + ABID97_RS08990 0.77 -0.2
1,887,495 - ABID97_RS08990 0.85 +0.4
1,887,495 - ABID97_RS08990 0.85 +0.8
1,887,495 - ABID97_RS08990 0.85 +1.6
1,888,183 + +3.2
1,888,183 + ABID97_RS08995 0.18 -2.9
1,888,291 + ABID97_RS08995 0.26 -0.4
1,888,493 - ABID97_RS08995 0.41 -0.1
1,889,259 + -1.5
1,889,658 - +0.5
1,889,723 + -0.0
1,889,871 - ABID97_RS09000 0.13 -0.1
1,889,871 - ABID97_RS09000 0.13 +0.1
1,889,877 - ABID97_RS09000 0.13 -0.5
1,889,891 + ABID97_RS09000 0.14 -0.4

Or see this region's nucleotide sequence