Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05895

Experiment: V2_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05885 and ABID97_RS05890 are separated by 10 nucleotidesABID97_RS05890 and ABID97_RS05895 are separated by 96 nucleotidesABID97_RS05895 and ABID97_RS05900 are separated by 42 nucleotidesABID97_RS05900 and ABID97_RS05905 are separated by 13 nucleotides ABID97_RS05885: ABID97_RS05885 - thioesterase family protein, at 1,244,085 to 1,244,915 _RS05885 ABID97_RS05890: ABID97_RS05890 - SDR family oxidoreductase, at 1,244,926 to 1,245,666 _RS05890 ABID97_RS05895: ABID97_RS05895 - 2-hydroxychromene-2-carboxylate isomerase, at 1,245,763 to 1,246,356 _RS05895 ABID97_RS05900: ABID97_RS05900 - enoyl-CoA hydratase, at 1,246,399 to 1,247,163 _RS05900 ABID97_RS05905: ABID97_RS05905 - acyl-CoA thioesterase, at 1,247,177 to 1,247,602 _RS05905 Position (kb) 1245 1246 1247Strain fitness (log2 ratio) -2 -1 0 1 2at 1244.901 kb on + strandat 1244.902 kb on - strandat 1244.914 kb on - strandat 1245.232 kb on + strand, within ABID97_RS05890at 1245.536 kb on - strand, within ABID97_RS05890at 1245.784 kb on + strandat 1245.946 kb on + strand, within ABID97_RS05895at 1245.946 kb on + strand, within ABID97_RS05895at 1245.947 kb on - strand, within ABID97_RS05895at 1245.983 kb on - strand, within ABID97_RS05895at 1246.087 kb on + strand, within ABID97_RS05895at 1246.087 kb on + strand, within ABID97_RS05895at 1246.489 kb on + strand, within ABID97_RS05900at 1246.489 kb on + strand, within ABID97_RS05900at 1246.490 kb on - strand, within ABID97_RS05900at 1247.230 kb on - strand, within ABID97_RS05905at 1247.230 kb on - strand, within ABID97_RS05905at 1247.260 kb on - strand, within ABID97_RS05905at 1247.343 kb on + strand, within ABID97_RS05905at 1247.343 kb on + strand, within ABID97_RS05905

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_100
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1,244,901 + -0.5
1,244,902 - -0.5
1,244,914 - +2.4
1,245,232 + ABID97_RS05890 0.41 -0.5
1,245,536 - ABID97_RS05890 0.82 -0.7
1,245,784 + +1.9
1,245,946 + ABID97_RS05895 0.31 +0.7
1,245,946 + ABID97_RS05895 0.31 -1.3
1,245,947 - ABID97_RS05895 0.31 +0.0
1,245,983 - ABID97_RS05895 0.37 +2.2
1,246,087 + ABID97_RS05895 0.55 +0.2
1,246,087 + ABID97_RS05895 0.55 +1.8
1,246,489 + ABID97_RS05900 0.12 -1.8
1,246,489 + ABID97_RS05900 0.12 -0.4
1,246,490 - ABID97_RS05900 0.12 -0.4
1,247,230 - ABID97_RS05905 0.12 +0.3
1,247,230 - ABID97_RS05905 0.12 +0.0
1,247,260 - ABID97_RS05905 0.19 +0.9
1,247,343 + ABID97_RS05905 0.39 +0.3
1,247,343 + ABID97_RS05905 0.39 +0.8

Or see this region's nucleotide sequence