Experiment: V2_100
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03790 and ABID97_RS03795 are separated by 7 nucleotides ABID97_RS03795 and ABID97_RS03800 are separated by 41 nucleotides ABID97_RS03800 and ABID97_RS03805 are separated by 59 nucleotides
ABID97_RS03790: ABID97_RS03790 - branched-chain amino acid transaminase, at 776,871 to 777,824
_RS03790
ABID97_RS03795: ABID97_RS03795 - zinc-finger domain-containing protein, at 777,832 to 778,041
_RS03795
ABID97_RS03800: ABID97_RS03800 - O-antigen ligase family protein, at 778,083 to 779,339
_RS03800
ABID97_RS03805: ABID97_RS03805 - ATP-binding protein, at 779,399 to 780,595
_RS03805
Position (kb) 778
779
780 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 777.177 kb on + strand, within ABID97_RS03790 at 777.177 kb on + strand, within ABID97_RS03790 at 777.178 kb on - strand, within ABID97_RS03790 at 777.276 kb on + strand, within ABID97_RS03790 at 777.276 kb on + strand, within ABID97_RS03790 at 777.277 kb on - strand, within ABID97_RS03790 at 777.277 kb on - strand, within ABID97_RS03790 at 777.328 kb on - strand, within ABID97_RS03790 at 777.328 kb on - strand, within ABID97_RS03790 at 777.328 kb on - strand, within ABID97_RS03790 at 777.381 kb on + strand, within ABID97_RS03790 at 777.381 kb on + strand, within ABID97_RS03790 at 777.382 kb on - strand, within ABID97_RS03790 at 777.513 kb on + strand, within ABID97_RS03790 at 777.631 kb on - strand, within ABID97_RS03790 at 777.631 kb on - strand, within ABID97_RS03790 at 777.631 kb on - strand, within ABID97_RS03790 at 777.631 kb on - strand, within ABID97_RS03790 at 777.798 kb on + strand at 777.798 kb on + strand at 777.798 kb on + strand at 777.798 kb on + strand at 777.799 kb on - strand at 777.946 kb on + strand, within ABID97_RS03795 at 777.947 kb on - strand, within ABID97_RS03795 at 778.085 kb on - strand at 778.085 kb on - strand at 778.183 kb on + strand at 778.184 kb on - strand at 778.184 kb on - strand at 778.525 kb on + strand, within ABID97_RS03800 at 778.525 kb on + strand, within ABID97_RS03800 at 778.526 kb on - strand, within ABID97_RS03800 at 778.526 kb on - strand, within ABID97_RS03800 at 778.627 kb on + strand, within ABID97_RS03800 at 778.627 kb on + strand, within ABID97_RS03800 at 778.628 kb on - strand, within ABID97_RS03800 at 778.628 kb on - strand, within ABID97_RS03800 at 778.628 kb on - strand, within ABID97_RS03800 at 778.630 kb on - strand, within ABID97_RS03800 at 779.158 kb on + strand, within ABID97_RS03800 at 779.159 kb on - strand, within ABID97_RS03800 at 779.263 kb on + strand at 779.264 kb on - strand at 779.353 kb on + strand at 779.562 kb on + strand, within ABID97_RS03805 at 779.563 kb on - strand, within ABID97_RS03805
Per-strain Table
Position Strand Gene LocusTag Fraction V2_100 remove 777,177 + ABID97_RS03790 0.32 +0.5 777,177 + ABID97_RS03790 0.32 -0.1 777,178 - ABID97_RS03790 0.32 -0.8 777,276 + ABID97_RS03790 0.42 +0.1 777,276 + ABID97_RS03790 0.42 +1.0 777,277 - ABID97_RS03790 0.43 -1.8 777,277 - ABID97_RS03790 0.43 +0.6 777,328 - ABID97_RS03790 0.48 -0.2 777,328 - ABID97_RS03790 0.48 -0.9 777,328 - ABID97_RS03790 0.48 +1.1 777,381 + ABID97_RS03790 0.53 -1.4 777,381 + ABID97_RS03790 0.53 -0.2 777,382 - ABID97_RS03790 0.54 +0.4 777,513 + ABID97_RS03790 0.67 -1.5 777,631 - ABID97_RS03790 0.80 -0.1 777,631 - ABID97_RS03790 0.80 -1.2 777,631 - ABID97_RS03790 0.80 -1.3 777,631 - ABID97_RS03790 0.80 +0.0 777,798 + -1.0 777,798 + -0.5 777,798 + +0.7 777,798 + -0.5 777,799 - -0.1 777,946 + ABID97_RS03795 0.54 -0.7 777,947 - ABID97_RS03795 0.55 -1.3 778,085 - +1.2 778,085 - -0.5 778,183 + +1.5 778,184 - +2.3 778,184 - +3.0 778,525 + ABID97_RS03800 0.35 -0.3 778,525 + ABID97_RS03800 0.35 +1.8 778,526 - ABID97_RS03800 0.35 +1.5 778,526 - ABID97_RS03800 0.35 +0.7 778,627 + ABID97_RS03800 0.43 +1.0 778,627 + ABID97_RS03800 0.43 +0.9 778,628 - ABID97_RS03800 0.43 +0.5 778,628 - ABID97_RS03800 0.43 +0.0 778,628 - ABID97_RS03800 0.43 +1.6 778,630 - ABID97_RS03800 0.44 +0.9 779,158 + ABID97_RS03800 0.86 -0.5 779,159 - ABID97_RS03800 0.86 +3.0 779,263 + +1.2 779,264 - +0.8 779,353 + +0.7 779,562 + ABID97_RS03805 0.14 +0.2 779,563 - ABID97_RS03805 0.14 -1.2
Or see this region's nucleotide sequence