Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02585

Experiment: V2_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02575 and ABID97_RS02580 are separated by 18 nucleotidesABID97_RS02580 and ABID97_RS02585 are separated by 136 nucleotidesABID97_RS02585 and ABID97_RS02590 overlap by 56 nucleotidesABID97_RS02590 and ABID97_RS02595 are separated by 34 nucleotides ABID97_RS02575: ABID97_RS02575 - DUF72 domain-containing protein, at 527,748 to 528,545 _RS02575 ABID97_RS02580: ABID97_RS02580 - polymer-forming cytoskeletal protein, at 528,564 to 529,079 _RS02580 ABID97_RS02585: ABID97_RS02585 - ion transporter, at 529,216 to 530,139 _RS02585 ABID97_RS02590: ABID97_RS02590 - YigZ family protein, at 530,084 to 530,674 _RS02590 ABID97_RS02595: ABID97_RS02595 - methionine biosynthesis protein MetW, at 530,709 to 531,296 _RS02595 Position (kb) 529 530 531Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 528.258 kb on + strand, within ABID97_RS02575at 528.258 kb on + strand, within ABID97_RS02575at 528.258 kb on + strand, within ABID97_RS02575at 528.259 kb on - strand, within ABID97_RS02575at 528.259 kb on - strand, within ABID97_RS02575at 528.330 kb on + strand, within ABID97_RS02575at 528.373 kb on - strand, within ABID97_RS02575at 528.454 kb on - strand, within ABID97_RS02575at 528.454 kb on - strand, within ABID97_RS02575at 528.454 kb on - strand, within ABID97_RS02575at 528.650 kb on - strand, within ABID97_RS02580at 529.073 kb on + strandat 529.073 kb on + strandat 529.073 kb on + strandat 529.073 kb on + strandat 529.074 kb on - strandat 529.110 kb on - strandat 529.110 kb on - strandat 529.110 kb on - strandat 529.163 kb on - strandat 529.163 kb on - strandat 529.163 kb on - strandat 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.499 kb on - strand, within ABID97_RS02585at 529.499 kb on - strand, within ABID97_RS02585at 529.499 kb on - strand, within ABID97_RS02585at 529.499 kb on - strand, within ABID97_RS02585at 529.499 kb on - strand, within ABID97_RS02585at 529.552 kb on + strand, within ABID97_RS02585at 529.552 kb on + strand, within ABID97_RS02585at 529.552 kb on + strand, within ABID97_RS02585at 529.552 kb on + strand, within ABID97_RS02585at 529.553 kb on - strand, within ABID97_RS02585at 529.618 kb on + strand, within ABID97_RS02585at 529.619 kb on - strand, within ABID97_RS02585at 529.619 kb on - strand, within ABID97_RS02585at 529.682 kb on - strand, within ABID97_RS02585at 529.694 kb on - strand, within ABID97_RS02585at 529.792 kb on + strand, within ABID97_RS02585at 529.792 kb on + strand, within ABID97_RS02585at 529.792 kb on + strand, within ABID97_RS02585at 529.792 kb on + strand, within ABID97_RS02585at 529.792 kb on + strand, within ABID97_RS02585at 529.792 kb on + strand, within ABID97_RS02585at 529.792 kb on + strand, within ABID97_RS02585at 529.793 kb on - strand, within ABID97_RS02585at 529.793 kb on - strand, within ABID97_RS02585at 529.793 kb on - strand, within ABID97_RS02585at 529.793 kb on - strand, within ABID97_RS02585at 529.793 kb on - strand, within ABID97_RS02585at 529.793 kb on - strand, within ABID97_RS02585at 529.843 kb on + strand, within ABID97_RS02585at 529.843 kb on + strand, within ABID97_RS02585at 529.843 kb on + strand, within ABID97_RS02585at 529.844 kb on - strand, within ABID97_RS02585at 529.844 kb on - strand, within ABID97_RS02585at 530.085 kb on + strandat 530.085 kb on + strandat 530.085 kb on + strandat 530.086 kb on - strandat 530.086 kb on - strandat 530.262 kb on + strand, within ABID97_RS02590at 530.262 kb on + strand, within ABID97_RS02590at 530.346 kb on + strand, within ABID97_RS02590at 530.347 kb on - strand, within ABID97_RS02590at 530.391 kb on + strand, within ABID97_RS02590

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_100
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528,258 + ABID97_RS02575 0.64 -1.0
528,258 + ABID97_RS02575 0.64 -0.1
528,258 + ABID97_RS02575 0.64 +0.2
528,259 - ABID97_RS02575 0.64 -0.0
528,259 - ABID97_RS02575 0.64 -0.2
528,330 + ABID97_RS02575 0.73 -0.1
528,373 - ABID97_RS02575 0.78 +1.0
528,454 - ABID97_RS02575 0.88 +0.5
528,454 - ABID97_RS02575 0.88 -3.6
528,454 - ABID97_RS02575 0.88 -1.0
528,650 - ABID97_RS02580 0.17 -0.6
529,073 + -0.6
529,073 + +0.0
529,073 + -1.3
529,073 + -2.2
529,074 - -0.2
529,110 - -0.2
529,110 - -0.4
529,110 - +2.3
529,163 - +0.2
529,163 - -0.2
529,163 - -0.5
529,498 + ABID97_RS02585 0.31 +0.1
529,498 + ABID97_RS02585 0.31 -0.6
529,498 + ABID97_RS02585 0.31 -0.1
529,498 + ABID97_RS02585 0.31 -0.8
529,498 + ABID97_RS02585 0.31 -0.5
529,498 + ABID97_RS02585 0.31 -0.5
529,498 + ABID97_RS02585 0.31 -0.8
529,498 + ABID97_RS02585 0.31 -0.1
529,499 - ABID97_RS02585 0.31 +0.1
529,499 - ABID97_RS02585 0.31 -0.2
529,499 - ABID97_RS02585 0.31 -0.6
529,499 - ABID97_RS02585 0.31 -0.2
529,499 - ABID97_RS02585 0.31 +0.6
529,552 + ABID97_RS02585 0.36 -1.0
529,552 + ABID97_RS02585 0.36 -1.1
529,552 + ABID97_RS02585 0.36 +0.1
529,552 + ABID97_RS02585 0.36 -1.0
529,553 - ABID97_RS02585 0.36 -0.4
529,618 + ABID97_RS02585 0.44 -0.6
529,619 - ABID97_RS02585 0.44 +0.2
529,619 - ABID97_RS02585 0.44 -1.2
529,682 - ABID97_RS02585 0.50 -0.6
529,694 - ABID97_RS02585 0.52 +0.1
529,792 + ABID97_RS02585 0.62 +0.5
529,792 + ABID97_RS02585 0.62 -0.2
529,792 + ABID97_RS02585 0.62 -1.0
529,792 + ABID97_RS02585 0.62 -0.8
529,792 + ABID97_RS02585 0.62 -2.3
529,792 + ABID97_RS02585 0.62 -0.3
529,792 + ABID97_RS02585 0.62 +0.4
529,793 - ABID97_RS02585 0.62 -0.7
529,793 - ABID97_RS02585 0.62 -0.6
529,793 - ABID97_RS02585 0.62 -0.5
529,793 - ABID97_RS02585 0.62 -0.6
529,793 - ABID97_RS02585 0.62 +1.9
529,793 - ABID97_RS02585 0.62 -2.2
529,843 + ABID97_RS02585 0.68 -0.8
529,843 + ABID97_RS02585 0.68 -0.3
529,843 + ABID97_RS02585 0.68 -1.5
529,844 - ABID97_RS02585 0.68 -0.7
529,844 - ABID97_RS02585 0.68 +1.3
530,085 + -0.7
530,085 + +1.0
530,085 + -0.8
530,086 - -1.6
530,086 - -0.2
530,262 + ABID97_RS02590 0.30 -0.5
530,262 + ABID97_RS02590 0.30 +0.3
530,346 + ABID97_RS02590 0.44 -2.9
530,347 - ABID97_RS02590 0.45 -0.4
530,391 + ABID97_RS02590 0.52 -0.1

Or see this region's nucleotide sequence