Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00945

Experiment: V2_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00940 and ABID97_RS00945 are separated by 50 nucleotidesABID97_RS00945 and ABID97_RS00950 are separated by 124 nucleotides ABID97_RS00940: ABID97_RS00940 - serine/threonine protein kinase, at 188,893 to 189,930 _RS00940 ABID97_RS00945: ABID97_RS00945 - molecular chaperone HtpG, at 189,981 to 192,017 _RS00945 ABID97_RS00950: ABID97_RS00950 - ABC transporter substrate-binding protein, at 192,142 to 193,188 _RS00950 Position (kb) 189 190 191 192 193Strain fitness (log2 ratio) -2 -1 0 1 2 3at 189.035 kb on - strand, within ABID97_RS00940at 189.035 kb on - strand, within ABID97_RS00940at 189.035 kb on - strand, within ABID97_RS00940at 189.419 kb on + strandat 189.419 kb on + strand, within ABID97_RS00940at 189.420 kb on - strand, within ABID97_RS00940at 189.784 kb on + strand, within ABID97_RS00940at 189.785 kb on - strand, within ABID97_RS00940at 189.859 kb on + strandat 189.922 kb on + strandat 189.922 kb on + strandat 189.922 kb on + strandat 189.923 kb on - strandat 190.012 kb on + strandat 190.012 kb on + strandat 190.012 kb on + strandat 190.012 kb on + strandat 190.013 kb on - strandat 190.435 kb on + strand, within ABID97_RS00945at 190.435 kb on + strand, within ABID97_RS00945at 190.436 kb on - strand, within ABID97_RS00945at 190.436 kb on - strand, within ABID97_RS00945at 190.552 kb on + strand, within ABID97_RS00945at 190.553 kb on - strand, within ABID97_RS00945at 190.553 kb on - strand, within ABID97_RS00945at 190.553 kb on - strand, within ABID97_RS00945at 190.553 kb on - strand, within ABID97_RS00945at 190.555 kb on + strand, within ABID97_RS00945at 190.556 kb on - strand, within ABID97_RS00945at 190.591 kb on + strand, within ABID97_RS00945at 190.592 kb on - strand, within ABID97_RS00945at 190.592 kb on - strand, within ABID97_RS00945at 190.717 kb on + strand, within ABID97_RS00945at 190.718 kb on - strand, within ABID97_RS00945at 190.729 kb on + strand, within ABID97_RS00945at 190.730 kb on - strand, within ABID97_RS00945at 190.730 kb on - strand, within ABID97_RS00945at 191.038 kb on + strand, within ABID97_RS00945at 191.039 kb on - strand, within ABID97_RS00945at 191.090 kb on - strand, within ABID97_RS00945at 191.152 kb on + strand, within ABID97_RS00945at 191.152 kb on + strand, within ABID97_RS00945at 191.152 kb on + strand, within ABID97_RS00945at 191.152 kb on + strand, within ABID97_RS00945at 191.152 kb on + strand, within ABID97_RS00945at 191.153 kb on - strand, within ABID97_RS00945at 191.153 kb on - strand, within ABID97_RS00945at 191.153 kb on - strand, within ABID97_RS00945at 191.153 kb on - strand, within ABID97_RS00945at 191.153 kb on - strand, within ABID97_RS00945at 191.153 kb on - strand, within ABID97_RS00945at 191.218 kb on + strand, within ABID97_RS00945at 191.218 kb on + strand, within ABID97_RS00945at 191.219 kb on - strand, within ABID97_RS00945at 191.219 kb on - strand, within ABID97_RS00945at 191.240 kb on - strand, within ABID97_RS00945at 191.240 kb on - strand, within ABID97_RS00945at 191.413 kb on + strand, within ABID97_RS00945at 191.413 kb on + strand, within ABID97_RS00945at 191.414 kb on - strand, within ABID97_RS00945at 191.414 kb on - strand, within ABID97_RS00945at 191.452 kb on + strand, within ABID97_RS00945at 191.629 kb on + strand, within ABID97_RS00945at 191.630 kb on - strand, within ABID97_RS00945at 191.708 kb on + strand, within ABID97_RS00945at 191.709 kb on - strand, within ABID97_RS00945at 191.709 kb on - strand, within ABID97_RS00945at 191.843 kb on - strandat 191.938 kb on + strandat 191.938 kb on + strandat 192.029 kb on + strandat 192.029 kb on + strandat 192.029 kb on + strandat 192.030 kb on - strandat 192.030 kb on - strandat 192.030 kb on - strandat 192.030 kb on - strandat 192.030 kb on - strandat 192.213 kb on - strandat 192.227 kb on + strandat 192.356 kb on + strand, within ABID97_RS00950at 192.357 kb on - strand, within ABID97_RS00950at 192.357 kb on - strand, within ABID97_RS00950at 192.561 kb on - strand, within ABID97_RS00950at 192.561 kb on - strand, within ABID97_RS00950at 192.561 kb on - strand, within ABID97_RS00950at 192.647 kb on + strand, within ABID97_RS00950at 192.647 kb on + strand, within ABID97_RS00950at 192.647 kb on + strand, within ABID97_RS00950at 192.647 kb on + strand, within ABID97_RS00950at 192.676 kb on + strand, within ABID97_RS00950at 192.792 kb on - strand, within ABID97_RS00950at 192.860 kb on + strand, within ABID97_RS00950at 192.860 kb on + strand, within ABID97_RS00950

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_100
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189,035 - ABID97_RS00940 0.14 +0.5
189,035 - ABID97_RS00940 0.14 +0.2
189,035 - ABID97_RS00940 0.14 +1.5
189,419 + +3.2
189,419 + ABID97_RS00940 0.51 -0.5
189,420 - ABID97_RS00940 0.51 +1.6
189,784 + ABID97_RS00940 0.86 +1.4
189,785 - ABID97_RS00940 0.86 +0.4
189,859 + -0.4
189,922 + -0.1
189,922 + -0.2
189,922 + +0.5
189,923 - -0.5
190,012 + +0.0
190,012 + -0.6
190,012 + -0.2
190,012 + +0.3
190,013 - -1.0
190,435 + ABID97_RS00945 0.22 -0.6
190,435 + ABID97_RS00945 0.22 +0.8
190,436 - ABID97_RS00945 0.22 -1.2
190,436 - ABID97_RS00945 0.22 +0.6
190,552 + ABID97_RS00945 0.28 -0.8
190,553 - ABID97_RS00945 0.28 -0.4
190,553 - ABID97_RS00945 0.28 +0.8
190,553 - ABID97_RS00945 0.28 -1.1
190,553 - ABID97_RS00945 0.28 -1.2
190,555 + ABID97_RS00945 0.28 -1.1
190,556 - ABID97_RS00945 0.28 +0.4
190,591 + ABID97_RS00945 0.30 -1.5
190,592 - ABID97_RS00945 0.30 -0.2
190,592 - ABID97_RS00945 0.30 -0.7
190,717 + ABID97_RS00945 0.36 -1.4
190,718 - ABID97_RS00945 0.36 +0.4
190,729 + ABID97_RS00945 0.37 -0.5
190,730 - ABID97_RS00945 0.37 +0.5
190,730 - ABID97_RS00945 0.37 -0.1
191,038 + ABID97_RS00945 0.52 -0.6
191,039 - ABID97_RS00945 0.52 -1.8
191,090 - ABID97_RS00945 0.54 +0.7
191,152 + ABID97_RS00945 0.57 -0.3
191,152 + ABID97_RS00945 0.57 +0.1
191,152 + ABID97_RS00945 0.57 +0.8
191,152 + ABID97_RS00945 0.57 -0.9
191,152 + ABID97_RS00945 0.57 +0.6
191,153 - ABID97_RS00945 0.58 -0.6
191,153 - ABID97_RS00945 0.58 -0.4
191,153 - ABID97_RS00945 0.58 -0.3
191,153 - ABID97_RS00945 0.58 -1.2
191,153 - ABID97_RS00945 0.58 -0.1
191,153 - ABID97_RS00945 0.58 -1.0
191,218 + ABID97_RS00945 0.61 -0.8
191,218 + ABID97_RS00945 0.61 -0.4
191,219 - ABID97_RS00945 0.61 +0.3
191,219 - ABID97_RS00945 0.61 -0.5
191,240 - ABID97_RS00945 0.62 -0.4
191,240 - ABID97_RS00945 0.62 +2.2
191,413 + ABID97_RS00945 0.70 -0.8
191,413 + ABID97_RS00945 0.70 -1.3
191,414 - ABID97_RS00945 0.70 -0.4
191,414 - ABID97_RS00945 0.70 -2.1
191,452 + ABID97_RS00945 0.72 -0.3
191,629 + ABID97_RS00945 0.81 +0.6
191,630 - ABID97_RS00945 0.81 -0.3
191,708 + ABID97_RS00945 0.85 -0.4
191,709 - ABID97_RS00945 0.85 -1.2
191,709 - ABID97_RS00945 0.85 +1.2
191,843 - -0.4
191,938 + -0.1
191,938 + +0.2
192,029 + -0.7
192,029 + -0.1
192,029 + -0.0
192,030 - -0.8
192,030 - -0.3
192,030 - +0.5
192,030 - -0.2
192,030 - +0.0
192,213 - +1.2
192,227 + +0.5
192,356 + ABID97_RS00950 0.20 -0.2
192,357 - ABID97_RS00950 0.21 -0.8
192,357 - ABID97_RS00950 0.21 -0.1
192,561 - ABID97_RS00950 0.40 -0.1
192,561 - ABID97_RS00950 0.40 -0.3
192,561 - ABID97_RS00950 0.40 +0.6
192,647 + ABID97_RS00950 0.48 -0.5
192,647 + ABID97_RS00950 0.48 -0.2
192,647 + ABID97_RS00950 0.48 +0.1
192,647 + ABID97_RS00950 0.48 +0.0
192,676 + ABID97_RS00950 0.51 +0.8
192,792 - ABID97_RS00950 0.62 -0.9
192,860 + ABID97_RS00950 0.69 -0.6
192,860 + ABID97_RS00950 0.69 +0.8

Or see this region's nucleotide sequence