Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00510

Experiment: V2_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00505 and ABID97_RS00510 are separated by 128 nucleotidesABID97_RS00510 and ABID97_RS00515 overlap by 20 nucleotides ABID97_RS00505: ABID97_RS00505 - lipoyl synthase, at 109,530 to 110,510 _RS00505 ABID97_RS00510: ABID97_RS00510 - class I adenylate-forming enzyme family protein, at 110,639 to 112,171 _RS00510 ABID97_RS00515: ABID97_RS00515 - SLC13 family permease, at 112,152 to 113,282 _RS00515 Position (kb) 110 111 112 113Strain fitness (log2 ratio) -2 -1 0 1 2at 110.576 kb on - strandat 110.738 kb on + strandat 110.739 kb on - strandat 110.843 kb on + strand, within ABID97_RS00510at 110.844 kb on - strand, within ABID97_RS00510at 111.131 kb on + strand, within ABID97_RS00510at 111.131 kb on + strand, within ABID97_RS00510at 111.131 kb on + strand, within ABID97_RS00510at 111.131 kb on + strand, within ABID97_RS00510at 111.131 kb on + strand, within ABID97_RS00510at 111.131 kb on + strand, within ABID97_RS00510at 111.131 kb on + strand, within ABID97_RS00510at 111.132 kb on - strand, within ABID97_RS00510at 111.132 kb on - strand, within ABID97_RS00510at 111.132 kb on - strand, within ABID97_RS00510at 111.132 kb on - strand, within ABID97_RS00510at 111.132 kb on - strand, within ABID97_RS00510at 111.132 kb on - strand, within ABID97_RS00510at 111.132 kb on - strand, within ABID97_RS00510at 111.132 kb on - strand, within ABID97_RS00510at 111.215 kb on + strand, within ABID97_RS00510at 111.216 kb on - strand, within ABID97_RS00510at 111.216 kb on - strand, within ABID97_RS00510at 111.216 kb on - strand, within ABID97_RS00510at 111.216 kb on - strand, within ABID97_RS00510at 111.261 kb on - strand, within ABID97_RS00510at 111.347 kb on + strand, within ABID97_RS00510at 111.347 kb on + strand, within ABID97_RS00510at 111.348 kb on - strand, within ABID97_RS00510at 111.404 kb on + strand, within ABID97_RS00510at 111.546 kb on - strand, within ABID97_RS00510at 111.896 kb on + strand, within ABID97_RS00510at 111.896 kb on + strand, within ABID97_RS00510at 111.897 kb on - strand, within ABID97_RS00510at 111.897 kb on - strand, within ABID97_RS00510at 112.614 kb on + strand, within ABID97_RS00515at 112.614 kb on + strand, within ABID97_RS00515at 112.614 kb on + strand, within ABID97_RS00515at 112.615 kb on - strand, within ABID97_RS00515at 112.615 kb on - strand, within ABID97_RS00515at 112.862 kb on - strand, within ABID97_RS00515at 112.884 kb on + strand, within ABID97_RS00515at 112.884 kb on + strand, within ABID97_RS00515at 112.885 kb on - strand, within ABID97_RS00515at 112.885 kb on - strand, within ABID97_RS00515at 112.885 kb on - strand, within ABID97_RS00515at 112.885 kb on - strand, within ABID97_RS00515

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_100
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110,576 - +0.4
110,738 + +2.0
110,739 - -0.8
110,843 + ABID97_RS00510 0.13 +0.4
110,844 - ABID97_RS00510 0.13 -0.0
111,131 + ABID97_RS00510 0.32 -0.3
111,131 + ABID97_RS00510 0.32 +0.4
111,131 + ABID97_RS00510 0.32 -0.9
111,131 + ABID97_RS00510 0.32 +1.7
111,131 + ABID97_RS00510 0.32 +0.8
111,131 + ABID97_RS00510 0.32 -0.2
111,131 + ABID97_RS00510 0.32 +0.6
111,132 - ABID97_RS00510 0.32 +0.4
111,132 - ABID97_RS00510 0.32 +0.0
111,132 - ABID97_RS00510 0.32 +1.9
111,132 - ABID97_RS00510 0.32 +0.0
111,132 - ABID97_RS00510 0.32 +0.4
111,132 - ABID97_RS00510 0.32 +0.0
111,132 - ABID97_RS00510 0.32 +0.2
111,132 - ABID97_RS00510 0.32 +0.8
111,215 + ABID97_RS00510 0.38 +0.4
111,216 - ABID97_RS00510 0.38 +0.3
111,216 - ABID97_RS00510 0.38 -0.7
111,216 - ABID97_RS00510 0.38 -2.7
111,216 - ABID97_RS00510 0.38 -1.1
111,261 - ABID97_RS00510 0.41 +1.6
111,347 + ABID97_RS00510 0.46 +1.1
111,347 + ABID97_RS00510 0.46 +2.3
111,348 - ABID97_RS00510 0.46 +1.2
111,404 + ABID97_RS00510 0.50 +0.6
111,546 - ABID97_RS00510 0.59 -0.4
111,896 + ABID97_RS00510 0.82 +0.6
111,896 + ABID97_RS00510 0.82 +0.5
111,897 - ABID97_RS00510 0.82 +0.7
111,897 - ABID97_RS00510 0.82 +1.0
112,614 + ABID97_RS00515 0.41 +0.4
112,614 + ABID97_RS00515 0.41 -0.6
112,614 + ABID97_RS00515 0.41 +1.7
112,615 - ABID97_RS00515 0.41 +0.5
112,615 - ABID97_RS00515 0.41 +0.6
112,862 - ABID97_RS00515 0.63 -0.3
112,884 + ABID97_RS00515 0.65 +0.4
112,884 + ABID97_RS00515 0.65 -0.6
112,885 - ABID97_RS00515 0.65 -0.1
112,885 - ABID97_RS00515 0.65 +0.3
112,885 - ABID97_RS00515 0.65 +0.1
112,885 - ABID97_RS00515 0.65 -1.5

Or see this region's nucleotide sequence