Experiment: V2_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20880 and ABID97_RS20885 overlap by 4 nucleotides ABID97_RS20885 and ABID97_RS20890 are separated by 91 nucleotides ABID97_RS20890 and ABID97_RS20895 are separated by 133 nucleotides
ABID97_RS20880: ABID97_RS20880 - histidine kinase, at 4,317,825 to 4,318,895
_RS20880
ABID97_RS20885: ABID97_RS20885 - LytTR family DNA-binding domain-containing protein, at 4,318,892 to 4,319,731
_RS20885
ABID97_RS20890: ABID97_RS20890 - hypothetical protein, at 4,319,823 to 4,320,170
_RS20890
ABID97_RS20895: ABID97_RS20895 - glutamine--tRNA ligase/YqeY domain fusion protein, at 4,320,304 to 4,322,118
_RS20895
Position (kb) 4318
4319
4320 Strain fitness (log2 ratio) -2
-1
0
1 at 4317.969 kb on + strand, within ABID97_RS20880 at 4317.969 kb on + strand, within ABID97_RS20880 at 4317.970 kb on - strand, within ABID97_RS20880 at 4318.072 kb on - strand, within ABID97_RS20880 at 4318.239 kb on + strand, within ABID97_RS20880 at 4318.240 kb on - strand, within ABID97_RS20880 at 4318.431 kb on + strand, within ABID97_RS20880 at 4318.431 kb on + strand, within ABID97_RS20880 at 4318.432 kb on - strand, within ABID97_RS20880 at 4318.977 kb on + strand, within ABID97_RS20885 at 4318.978 kb on - strand, within ABID97_RS20885 at 4318.978 kb on - strand, within ABID97_RS20885 at 4318.978 kb on - strand, within ABID97_RS20885 at 4318.978 kb on - strand, within ABID97_RS20885 at 4318.978 kb on - strand, within ABID97_RS20885 at 4319.171 kb on + strand, within ABID97_RS20885 at 4319.208 kb on - strand, within ABID97_RS20885 at 4319.208 kb on - strand, within ABID97_RS20885 at 4319.208 kb on - strand, within ABID97_RS20885 at 4319.474 kb on + strand, within ABID97_RS20885 at 4319.475 kb on - strand, within ABID97_RS20885 at 4319.475 kb on - strand, within ABID97_RS20885 at 4319.495 kb on + strand, within ABID97_RS20885 at 4319.495 kb on + strand, within ABID97_RS20885 at 4319.495 kb on + strand, within ABID97_RS20885 at 4319.495 kb on + strand, within ABID97_RS20885 at 4319.526 kb on - strand, within ABID97_RS20885 at 4319.526 kb on - strand, within ABID97_RS20885 at 4319.705 kb on + strand at 4319.706 kb on - strand at 4319.865 kb on + strand, within ABID97_RS20890 at 4319.866 kb on + strand, within ABID97_RS20890 at 4319.870 kb on - strand, within ABID97_RS20890 at 4319.881 kb on + strand, within ABID97_RS20890 at 4319.899 kb on + strand, within ABID97_RS20890 at 4319.900 kb on - strand, within ABID97_RS20890 at 4319.902 kb on + strand, within ABID97_RS20890 at 4319.902 kb on + strand, within ABID97_RS20890 at 4319.902 kb on + strand, within ABID97_RS20890 at 4319.902 kb on + strand, within ABID97_RS20890 at 4319.902 kb on + strand, within ABID97_RS20890 at 4319.924 kb on - strand, within ABID97_RS20890 at 4319.947 kb on + strand, within ABID97_RS20890 at 4319.947 kb on + strand, within ABID97_RS20890 at 4319.968 kb on + strand, within ABID97_RS20890 at 4319.993 kb on - strand, within ABID97_RS20890 at 4320.008 kb on - strand, within ABID97_RS20890 at 4320.010 kb on + strand, within ABID97_RS20890 at 4320.207 kb on + strand at 4320.207 kb on + strand at 4320.207 kb on + strand at 4320.207 kb on + strand at 4320.207 kb on + strand at 4320.207 kb on + strand at 4320.207 kb on + strand at 4320.207 kb on + strand at 4320.207 kb on + strand at 4320.207 kb on + strand at 4320.207 kb on + strand at 4320.207 kb on + strand at 4320.207 kb on + strand at 4320.208 kb on - strand at 4320.208 kb on - strand at 4320.208 kb on - strand at 4320.208 kb on - strand at 4320.208 kb on - strand at 4320.208 kb on - strand at 4320.212 kb on - strand at 4320.212 kb on - strand at 4320.293 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction V2_1 remove 4,317,969 + ABID97_RS20880 0.13 -0.4 4,317,969 + ABID97_RS20880 0.13 -0.1 4,317,970 - ABID97_RS20880 0.14 +0.1 4,318,072 - ABID97_RS20880 0.23 +0.3 4,318,239 + ABID97_RS20880 0.39 -0.2 4,318,240 - ABID97_RS20880 0.39 -1.1 4,318,431 + ABID97_RS20880 0.57 +1.7 4,318,431 + ABID97_RS20880 0.57 +0.6 4,318,432 - ABID97_RS20880 0.57 +0.8 4,318,977 + ABID97_RS20885 0.10 -0.9 4,318,978 - ABID97_RS20885 0.10 +0.8 4,318,978 - ABID97_RS20885 0.10 +0.2 4,318,978 - ABID97_RS20885 0.10 -0.3 4,318,978 - ABID97_RS20885 0.10 -0.5 4,318,978 - ABID97_RS20885 0.10 +0.0 4,319,171 + ABID97_RS20885 0.33 +0.4 4,319,208 - ABID97_RS20885 0.38 +0.0 4,319,208 - ABID97_RS20885 0.38 +0.6 4,319,208 - ABID97_RS20885 0.38 +0.9 4,319,474 + ABID97_RS20885 0.69 -0.1 4,319,475 - ABID97_RS20885 0.69 +0.9 4,319,475 - ABID97_RS20885 0.69 -0.2 4,319,495 + ABID97_RS20885 0.72 -0.4 4,319,495 + ABID97_RS20885 0.72 +0.0 4,319,495 + ABID97_RS20885 0.72 +0.4 4,319,495 + ABID97_RS20885 0.72 -0.1 4,319,526 - ABID97_RS20885 0.75 +0.4 4,319,526 - ABID97_RS20885 0.75 -0.1 4,319,705 + -1.4 4,319,706 - -0.0 4,319,865 + ABID97_RS20890 0.12 +0.3 4,319,866 + ABID97_RS20890 0.12 -0.9 4,319,870 - ABID97_RS20890 0.14 +0.1 4,319,881 + ABID97_RS20890 0.17 +0.9 4,319,899 + ABID97_RS20890 0.22 +1.2 4,319,900 - ABID97_RS20890 0.22 -2.7 4,319,902 + ABID97_RS20890 0.23 -0.0 4,319,902 + ABID97_RS20890 0.23 +0.2 4,319,902 + ABID97_RS20890 0.23 +0.3 4,319,902 + ABID97_RS20890 0.23 -0.8 4,319,902 + ABID97_RS20890 0.23 -0.1 4,319,924 - ABID97_RS20890 0.29 -0.8 4,319,947 + ABID97_RS20890 0.36 -0.1 4,319,947 + ABID97_RS20890 0.36 +0.2 4,319,968 + ABID97_RS20890 0.42 +0.8 4,319,993 - ABID97_RS20890 0.49 +0.3 4,320,008 - ABID97_RS20890 0.53 -0.4 4,320,010 + ABID97_RS20890 0.54 +0.1 4,320,207 + +0.3 4,320,207 + -0.2 4,320,207 + -0.1 4,320,207 + -0.3 4,320,207 + -1.0 4,320,207 + +0.2 4,320,207 + +0.5 4,320,207 + +0.5 4,320,207 + +0.1 4,320,207 + -0.0 4,320,207 + -0.5 4,320,207 + +0.0 4,320,207 + -0.8 4,320,208 - -0.2 4,320,208 - +0.3 4,320,208 - +0.1 4,320,208 - +1.2 4,320,208 - -0.3 4,320,208 - +0.2 4,320,212 - -0.1 4,320,212 - +0.6 4,320,293 - -0.5
Or see this region's nucleotide sequence