Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18465

Experiment: V2_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18460 and ABID97_RS18465 overlap by 4 nucleotidesABID97_RS18465 and ABID97_RS18470 overlap by 4 nucleotidesABID97_RS18470 and ABID97_RS18475 overlap by 8 nucleotides ABID97_RS18460: ABID97_RS18460 - site-specific integrase, at 3,806,757 to 3,808,001 _RS18460 ABID97_RS18465: ABID97_RS18465 - tyrosine-type recombinase/integrase, at 3,807,998 to 3,808,924 _RS18465 ABID97_RS18470: ABID97_RS18470 - site-specific integrase, at 3,808,921 to 3,809,550 _RS18470 ABID97_RS18475: ABID97_RS18475 - tyrosine-type recombinase/integrase, at 3,809,543 to 3,809,923 _RS18475 Position (kb) 3807 3808 3809Strain fitness (log2 ratio) -1 0 1at 3807.348 kb on + strand, within ABID97_RS18460at 3807.435 kb on + strand, within ABID97_RS18460at 3807.436 kb on - strand, within ABID97_RS18460at 3807.676 kb on - strand, within ABID97_RS18460at 3807.834 kb on - strand, within ABID97_RS18460at 3808.581 kb on + strand, within ABID97_RS18465at 3808.643 kb on + strand, within ABID97_RS18465at 3808.844 kb on + strandat 3808.844 kb on + strandat 3809.025 kb on + strand, within ABID97_RS18470at 3809.346 kb on + strand, within ABID97_RS18470at 3809.347 kb on - strand, within ABID97_RS18470at 3809.500 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_1
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3,807,348 + ABID97_RS18460 0.47 +0.3
3,807,435 + ABID97_RS18460 0.54 -0.3
3,807,436 - ABID97_RS18460 0.55 +0.7
3,807,676 - ABID97_RS18460 0.74 +1.5
3,807,834 - ABID97_RS18460 0.87 -0.4
3,808,581 + ABID97_RS18465 0.63 +0.4
3,808,643 + ABID97_RS18465 0.70 +0.2
3,808,844 + +0.4
3,808,844 + -0.2
3,809,025 + ABID97_RS18470 0.17 -0.2
3,809,346 + ABID97_RS18470 0.67 +0.0
3,809,347 - ABID97_RS18470 0.68 -1.7
3,809,500 + -0.2

Or see this region's nucleotide sequence