Experiment: V2_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16190 and ABID97_RS16195 overlap by 4 nucleotides ABID97_RS16195 and ABID97_RS16200 overlap by 4 nucleotides ABID97_RS16200 and ABID97_RS16205 are separated by 37 nucleotides
ABID97_RS16190: ABID97_RS16190 - oxygen-independent coproporphyrinogen III oxidase, at 3,352,696 to 3,354,117
_RS16190
ABID97_RS16195: ABID97_RS16195 - hypothetical protein, at 3,354,114 to 3,354,365
_RS16195
ABID97_RS16200: ABID97_RS16200 - FixH family protein, at 3,354,362 to 3,354,634
_RS16200
ABID97_RS16205: ABID97_RS16205 - cytochrome c oxidase accessory protein CcoG, at 3,354,672 to 3,356,132
_RS16205
Position (kb)
3354
3355 Strain fitness (log2 ratio)
-2
-1
0
1 at 3353.214 kb on - strand, within ABID97_RS16190 at 3353.339 kb on + strand, within ABID97_RS16190 at 3353.345 kb on + strand, within ABID97_RS16190 at 3353.804 kb on + strand, within ABID97_RS16190 at 3353.864 kb on + strand, within ABID97_RS16190 at 3353.867 kb on + strand, within ABID97_RS16190 at 3353.900 kb on + strand, within ABID97_RS16190 at 3353.901 kb on - strand, within ABID97_RS16190 at 3354.006 kb on - strand at 3354.014 kb on + strand at 3354.220 kb on + strand, within ABID97_RS16195 at 3354.221 kb on - strand, within ABID97_RS16195 at 3354.638 kb on + strand at 3354.883 kb on + strand, within ABID97_RS16205
Per-strain Table
Position Strand Gene LocusTag Fraction V2_1 remove 3,353,214 - ABID97_RS16190 0.36 -1.1 3,353,339 + ABID97_RS16190 0.45 -0.1 3,353,345 + ABID97_RS16190 0.46 +0.3 3,353,804 + ABID97_RS16190 0.78 -0.5 3,353,864 + ABID97_RS16190 0.82 +0.4 3,353,867 + ABID97_RS16190 0.82 +0.1 3,353,900 + ABID97_RS16190 0.85 +0.6 3,353,901 - ABID97_RS16190 0.85 -1.9 3,354,006 - +0.1 3,354,014 + -0.7 3,354,220 + ABID97_RS16195 0.42 -0.7 3,354,221 - ABID97_RS16195 0.42 +0.1 3,354,638 + +0.6 3,354,883 + ABID97_RS16205 0.14 -0.0
Or see this region's nucleotide sequence