Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS02895 and RPSI07_RS02900 are separated by 58 nucleotides RPSI07_RS02900 and RPSI07_RS02905 overlap by 4 nucleotides
RPSI07_RS02895: RPSI07_RS02895 - rhs element vgr-like protein, at 799,449 to 801,947
_RS02895
RPSI07_RS02900: RPSI07_RS02900 - type VI secretion system protein ImpK, at 802,006 to 802,797
_RS02900
RPSI07_RS02905: RPSI07_RS02905 - type VI secretion system baseplate subunit TssK, at 802,794 to 804,140
_RS02905
Position (kb) 799
800
801
802 Strain fitness (log2 ratio) -2
-1
0
1
2 at 798.524 kb on + strand at 798.572 kb on - strand at 798.580 kb on - strand at 798.604 kb on + strand at 798.604 kb on + strand at 798.605 kb on - strand at 798.663 kb on + strand at 798.664 kb on - strand at 798.697 kb on - strand at 798.718 kb on - strand at 798.783 kb on + strand at 798.784 kb on - strand at 798.863 kb on - strand at 798.863 kb on - strand at 798.917 kb on + strand at 798.918 kb on - strand at 798.919 kb on + strand at 798.919 kb on + strand at 798.919 kb on + strand at 798.919 kb on + strand at 798.920 kb on - strand at 799.017 kb on + strand at 799.252 kb on - strand at 799.281 kb on + strand at 799.281 kb on + strand at 799.296 kb on - strand at 799.375 kb on + strand at 799.376 kb on - strand at 799.432 kb on + strand at 799.432 kb on + strand at 799.432 kb on + strand at 799.432 kb on + strand at 799.432 kb on + strand at 799.432 kb on + strand at 799.432 kb on + strand at 799.433 kb on - strand at 799.433 kb on - strand at 799.433 kb on - strand at 799.433 kb on - strand at 799.433 kb on - strand at 799.433 kb on - strand at 799.452 kb on + strand at 799.452 kb on + strand at 799.452 kb on + strand at 799.453 kb on - strand at 802.064 kb on + strand at 802.064 kb on + strand at 802.064 kb on + strand at 802.116 kb on + strand, within RPSI07_RS02900 at 802.116 kb on + strand, within RPSI07_RS02900 at 802.116 kb on + strand, within RPSI07_RS02900 at 802.116 kb on + strand, within RPSI07_RS02900 at 802.116 kb on + strand, within RPSI07_RS02900 at 802.117 kb on - strand, within RPSI07_RS02900 at 802.118 kb on + strand, within RPSI07_RS02900 at 802.118 kb on + strand, within RPSI07_RS02900 at 802.119 kb on - strand, within RPSI07_RS02900 at 802.119 kb on - strand, within RPSI07_RS02900 at 802.119 kb on - strand, within RPSI07_RS02900 at 802.119 kb on - strand, within RPSI07_RS02900 at 802.119 kb on - strand, within RPSI07_RS02900 at 802.280 kb on + strand, within RPSI07_RS02900 at 802.280 kb on + strand, within RPSI07_RS02900 at 802.281 kb on - strand, within RPSI07_RS02900 at 802.281 kb on - strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.348 kb on + strand, within RPSI07_RS02900 at 802.348 kb on + strand, within RPSI07_RS02900 at 802.348 kb on + strand, within RPSI07_RS02900 at 802.349 kb on - strand, within RPSI07_RS02900 at 802.349 kb on - strand, within RPSI07_RS02900 at 802.349 kb on - strand, within RPSI07_RS02900 at 802.529 kb on + strand, within RPSI07_RS02900 at 802.529 kb on + strand, within RPSI07_RS02900 at 802.530 kb on - strand, within RPSI07_RS02900 at 802.530 kb on - strand, within RPSI07_RS02900 at 802.682 kb on + strand, within RPSI07_RS02900 at 802.682 kb on + strand, within RPSI07_RS02900 at 802.682 kb on + strand, within RPSI07_RS02900 at 802.682 kb on + strand, within RPSI07_RS02900 at 802.683 kb on - strand, within RPSI07_RS02900 at 802.683 kb on - strand, within RPSI07_RS02900 at 802.789 kb on - strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.850 kb on - strand at 802.850 kb on - strand at 802.850 kb on - strand at 802.850 kb on - strand at 802.850 kb on - strand at 802.850 kb on - strand at 802.885 kb on + strand at 802.885 kb on + strand at 802.886 kb on - strand at 802.886 kb on - strand at 802.886 kb on - strand at 802.886 kb on - strand at 802.915 kb on + strand at 802.915 kb on + strand at 802.915 kb on + strand at 802.916 kb on - strand at 802.916 kb on - strand at 802.916 kb on - strand at 802.917 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days remove 798,524 + -1.1 798,572 - +0.4 798,580 - -0.0 798,604 + +0.9 798,604 + +2.6 798,605 - -0.2 798,663 + -0.1 798,664 - +0.3 798,697 - -1.7 798,718 - +0.2 798,783 + +0.6 798,784 - -0.1 798,863 - -0.1 798,863 - -0.1 798,917 + +0.8 798,918 - -1.2 798,919 + -0.1 798,919 + -0.8 798,919 + -0.5 798,919 + -1.2 798,920 - -0.4 799,017 + -0.8 799,252 - +0.2 799,281 + -0.6 799,281 + +0.2 799,296 - +0.3 799,375 + +0.1 799,376 - +0.1 799,432 + -0.0 799,432 + -1.1 799,432 + +1.1 799,432 + -1.7 799,432 + +1.9 799,432 + +0.2 799,432 + +0.6 799,433 - +1.2 799,433 - -0.6 799,433 - -0.1 799,433 - +0.2 799,433 - +2.6 799,433 - -0.2 799,452 + +0.1 799,452 + -0.1 799,452 + -0.7 799,453 - +0.3 802,064 + +0.3 802,064 + -2.0 802,064 + +2.2 802,116 + RPSI07_RS02900 0.14 -1.0 802,116 + RPSI07_RS02900 0.14 +2.2 802,116 + RPSI07_RS02900 0.14 -0.4 802,116 + RPSI07_RS02900 0.14 +0.0 802,116 + RPSI07_RS02900 0.14 -1.3 802,117 - RPSI07_RS02900 0.14 -0.2 802,118 + RPSI07_RS02900 0.14 -0.3 802,118 + RPSI07_RS02900 0.14 +1.0 802,119 - RPSI07_RS02900 0.14 +1.3 802,119 - RPSI07_RS02900 0.14 -1.7 802,119 - RPSI07_RS02900 0.14 -1.7 802,119 - RPSI07_RS02900 0.14 -1.0 802,119 - RPSI07_RS02900 0.14 +0.5 802,280 + RPSI07_RS02900 0.35 -0.4 802,280 + RPSI07_RS02900 0.35 -0.0 802,281 - RPSI07_RS02900 0.35 +0.6 802,281 - RPSI07_RS02900 0.35 +0.6 802,310 + RPSI07_RS02900 0.38 -1.0 802,310 + RPSI07_RS02900 0.38 -0.6 802,310 + RPSI07_RS02900 0.38 -0.3 802,310 + RPSI07_RS02900 0.38 +2.0 802,310 + RPSI07_RS02900 0.38 -0.3 802,310 + RPSI07_RS02900 0.38 -0.4 802,310 + RPSI07_RS02900 0.38 +0.2 802,310 + RPSI07_RS02900 0.38 +1.2 802,310 + RPSI07_RS02900 0.38 -0.4 802,310 + RPSI07_RS02900 0.38 +0.2 802,311 - RPSI07_RS02900 0.39 -0.1 802,311 - RPSI07_RS02900 0.39 -1.6 802,311 - RPSI07_RS02900 0.39 +1.1 802,311 - RPSI07_RS02900 0.39 +0.9 802,311 - RPSI07_RS02900 0.39 -1.2 802,311 - RPSI07_RS02900 0.39 -0.9 802,311 - RPSI07_RS02900 0.39 -0.6 802,311 - RPSI07_RS02900 0.39 +1.1 802,311 - RPSI07_RS02900 0.39 -0.9 802,311 - RPSI07_RS02900 0.39 -1.2 802,311 - RPSI07_RS02900 0.39 +0.2 802,348 + RPSI07_RS02900 0.43 +1.3 802,348 + RPSI07_RS02900 0.43 +0.3 802,348 + RPSI07_RS02900 0.43 +0.3 802,349 - RPSI07_RS02900 0.43 +1.9 802,349 - RPSI07_RS02900 0.43 -0.4 802,349 - RPSI07_RS02900 0.43 +0.4 802,529 + RPSI07_RS02900 0.66 +1.6 802,529 + RPSI07_RS02900 0.66 -0.6 802,530 - RPSI07_RS02900 0.66 +1.9 802,530 - RPSI07_RS02900 0.66 +0.4 802,682 + RPSI07_RS02900 0.85 -0.3 802,682 + RPSI07_RS02900 0.85 +0.7 802,682 + RPSI07_RS02900 0.85 -0.6 802,682 + RPSI07_RS02900 0.85 -0.5 802,683 - RPSI07_RS02900 0.85 +2.2 802,683 - RPSI07_RS02900 0.85 -0.7 802,789 - -1.2 802,849 + -0.4 802,849 + -1.4 802,849 + +0.6 802,849 + +0.6 802,849 + -1.8 802,849 + -0.6 802,849 + -0.2 802,849 + +0.1 802,849 + +0.5 802,849 + +0.6 802,849 + -1.4 802,849 + +0.6 802,850 - +0.9 802,850 - -0.3 802,850 - +2.2 802,850 - +1.8 802,850 - +0.6 802,850 - -2.2 802,885 + +0.3 802,885 + -0.2 802,886 - -0.6 802,886 - -1.0 802,886 - +0.1 802,886 - -0.1 802,915 + +0.6 802,915 + -0.6 802,915 + -0.5 802,916 - -0.5 802,916 - +0.1 802,916 - +0.1 802,917 - -0.5
Or see this region's nucleotide sequence