Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27745

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27735 and ABID97_RS27740 overlap by 4 nucleotidesABID97_RS27740 and ABID97_RS27745 are separated by 7 nucleotidesABID97_RS27745 and ABID97_RS27750 overlap by 11 nucleotidesABID97_RS27750 and ABID97_RS27755 overlap by 14 nucleotides ABID97_RS27735: ABID97_RS27735 - ABC transporter permease, at 467,333 to 468,130 _RS27735 ABID97_RS27740: ABID97_RS27740 - ABC transporter ATP-binding protein, at 468,127 to 468,975 _RS27740 ABID97_RS27745: ABID97_RS27745 - HEAT repeat domain-containing protein, at 468,983 to 469,981 _RS27745 ABID97_RS27750: ABID97_RS27750 - DUF971 domain-containing protein, at 469,971 to 470,309 _RS27750 ABID97_RS27755: ABID97_RS27755 - tripartite tricarboxylate transporter substrate binding protein, at 470,296 to 471,312 _RS27755 Position (kb) 468 469 470Strain fitness (log2 ratio) -1 0 1at 467.993 kb on + strand, within ABID97_RS27735at 469.728 kb on - strand, within ABID97_RS27745at 470.717 kb on + strand, within ABID97_RS27755at 470.718 kb on - strand, within ABID97_RS27755at 470.718 kb on - strand, within ABID97_RS27755at 470.718 kb on - strand, within ABID97_RS27755at 470.943 kb on - strand, within ABID97_RS27755

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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467,993 + ABID97_RS27735 0.83 +1.0
469,728 - ABID97_RS27745 0.75 +0.3
470,717 + ABID97_RS27755 0.41 -0.1
470,718 - ABID97_RS27755 0.41 -0.1
470,718 - ABID97_RS27755 0.41 -0.6
470,718 - ABID97_RS27755 0.41 +0.3
470,943 - ABID97_RS27755 0.64 -0.2

Or see this region's nucleotide sequence