Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24540 and ABID97_RS24545 are separated by 47 nucleotides ABID97_RS24545 and ABID97_RS24550 overlap by 4 nucleotides ABID97_RS24550 and ABID97_RS24555 overlap by 37 nucleotides
ABID97_RS24540: ABID97_RS24540 - nitrilase, at 5,079,010 to 5,080,023
_RS24540
ABID97_RS24545: ABID97_RS24545 - branched-chain amino acid ABC transporter permease, at 5,080,071 to 5,081,072
_RS24545
ABID97_RS24550: ABID97_RS24550 - branched-chain amino acid ABC transporter permease, at 5,081,069 to 5,081,935
_RS24550
ABID97_RS24555: ABID97_RS24555 - ABC transporter ATP-binding protein, at 5,081,899 to 5,082,630
_RS24555
Position (kb) 5080
5081
5082 Strain fitness (log2 ratio) -1
0
1 at 5079.106 kb on + strand at 5079.106 kb on + strand at 5079.107 kb on - strand at 5079.107 kb on - strand at 5079.144 kb on - strand, within ABID97_RS24540 at 5079.216 kb on + strand, within ABID97_RS24540 at 5079.216 kb on + strand, within ABID97_RS24540 at 5079.216 kb on + strand, within ABID97_RS24540 at 5079.216 kb on + strand, within ABID97_RS24540 at 5079.216 kb on + strand, within ABID97_RS24540 at 5079.216 kb on + strand, within ABID97_RS24540 at 5079.216 kb on + strand, within ABID97_RS24540 at 5079.216 kb on + strand, within ABID97_RS24540 at 5079.217 kb on - strand, within ABID97_RS24540 at 5079.217 kb on - strand, within ABID97_RS24540 at 5079.217 kb on - strand, within ABID97_RS24540 at 5079.217 kb on - strand, within ABID97_RS24540 at 5079.371 kb on + strand, within ABID97_RS24540 at 5079.371 kb on + strand, within ABID97_RS24540 at 5079.371 kb on + strand, within ABID97_RS24540 at 5079.371 kb on + strand, within ABID97_RS24540 at 5079.371 kb on + strand, within ABID97_RS24540 at 5079.372 kb on - strand, within ABID97_RS24540 at 5079.372 kb on - strand, within ABID97_RS24540 at 5079.372 kb on - strand, within ABID97_RS24540 at 5079.372 kb on - strand, within ABID97_RS24540 at 5079.372 kb on - strand, within ABID97_RS24540 at 5079.372 kb on - strand, within ABID97_RS24540 at 5079.393 kb on - strand, within ABID97_RS24540 at 5079.393 kb on - strand, within ABID97_RS24540 at 5079.450 kb on - strand, within ABID97_RS24540 at 5079.509 kb on + strand, within ABID97_RS24540 at 5079.695 kb on + strand, within ABID97_RS24540 at 5080.055 kb on + strand at 5080.055 kb on + strand at 5080.199 kb on - strand, within ABID97_RS24545 at 5080.210 kb on + strand, within ABID97_RS24545 at 5080.211 kb on - strand, within ABID97_RS24545 at 5080.240 kb on + strand, within ABID97_RS24545 at 5080.367 kb on - strand, within ABID97_RS24545 at 5080.367 kb on - strand, within ABID97_RS24545 at 5080.828 kb on + strand, within ABID97_RS24545 at 5080.828 kb on + strand, within ABID97_RS24545 at 5080.829 kb on - strand, within ABID97_RS24545 at 5080.895 kb on + strand, within ABID97_RS24545 at 5081.313 kb on + strand, within ABID97_RS24550 at 5081.595 kb on + strand, within ABID97_RS24550 at 5081.596 kb on - strand, within ABID97_RS24550 at 5081.706 kb on + strand, within ABID97_RS24550 at 5081.707 kb on - strand, within ABID97_RS24550 at 5081.793 kb on + strand, within ABID97_RS24550 at 5081.793 kb on + strand, within ABID97_RS24550 at 5081.793 kb on + strand, within ABID97_RS24550 at 5081.794 kb on - strand, within ABID97_RS24550 at 5081.950 kb on + strand at 5082.027 kb on - strand, within ABID97_RS24555 at 5082.027 kb on - strand, within ABID97_RS24555
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 5,079,106 + -0.3 5,079,106 + +0.3 5,079,107 - +1.0 5,079,107 - +0.4 5,079,144 - ABID97_RS24540 0.13 -1.4 5,079,216 + ABID97_RS24540 0.20 -1.2 5,079,216 + ABID97_RS24540 0.20 +0.0 5,079,216 + ABID97_RS24540 0.20 -0.5 5,079,216 + ABID97_RS24540 0.20 +0.9 5,079,216 + ABID97_RS24540 0.20 -0.6 5,079,216 + ABID97_RS24540 0.20 +0.2 5,079,216 + ABID97_RS24540 0.20 -0.2 5,079,216 + ABID97_RS24540 0.20 +0.2 5,079,217 - ABID97_RS24540 0.20 -0.3 5,079,217 - ABID97_RS24540 0.20 +0.2 5,079,217 - ABID97_RS24540 0.20 -0.6 5,079,217 - ABID97_RS24540 0.20 +1.1 5,079,371 + ABID97_RS24540 0.36 -0.1 5,079,371 + ABID97_RS24540 0.36 +0.3 5,079,371 + ABID97_RS24540 0.36 +0.8 5,079,371 + ABID97_RS24540 0.36 +0.4 5,079,371 + ABID97_RS24540 0.36 -0.2 5,079,372 - ABID97_RS24540 0.36 -0.2 5,079,372 - ABID97_RS24540 0.36 +1.5 5,079,372 - ABID97_RS24540 0.36 -1.0 5,079,372 - ABID97_RS24540 0.36 -1.3 5,079,372 - ABID97_RS24540 0.36 -1.4 5,079,372 - ABID97_RS24540 0.36 -0.6 5,079,393 - ABID97_RS24540 0.38 +0.8 5,079,393 - ABID97_RS24540 0.38 -0.2 5,079,450 - ABID97_RS24540 0.43 -0.1 5,079,509 + ABID97_RS24540 0.49 +0.1 5,079,695 + ABID97_RS24540 0.68 +1.6 5,080,055 + -1.2 5,080,055 + -0.2 5,080,199 - ABID97_RS24545 0.13 +0.4 5,080,210 + ABID97_RS24545 0.14 +0.1 5,080,211 - ABID97_RS24545 0.14 +0.3 5,080,240 + ABID97_RS24545 0.17 +0.5 5,080,367 - ABID97_RS24545 0.30 +0.2 5,080,367 - ABID97_RS24545 0.30 -0.7 5,080,828 + ABID97_RS24545 0.76 -0.1 5,080,828 + ABID97_RS24545 0.76 +1.2 5,080,829 - ABID97_RS24545 0.76 +0.5 5,080,895 + ABID97_RS24545 0.82 +0.5 5,081,313 + ABID97_RS24550 0.28 -0.0 5,081,595 + ABID97_RS24550 0.61 +0.5 5,081,596 - ABID97_RS24550 0.61 -1.4 5,081,706 + ABID97_RS24550 0.73 +0.3 5,081,707 - ABID97_RS24550 0.74 +0.5 5,081,793 + ABID97_RS24550 0.84 +0.1 5,081,793 + ABID97_RS24550 0.84 +0.5 5,081,793 + ABID97_RS24550 0.84 -1.4 5,081,794 - ABID97_RS24550 0.84 +0.4 5,081,950 + -0.5 5,082,027 - ABID97_RS24555 0.17 -0.5 5,082,027 - ABID97_RS24555 0.17 -0.2
Or see this region's nucleotide sequence