Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21560 and ABID97_RS21565 are separated by 11 nucleotides ABID97_RS21565 and ABID97_RS21570 are separated by 22 nucleotides
ABID97_RS21560: ABID97_RS21560 - agmatinase, at 4,463,712 to 4,464,668
_RS21560
ABID97_RS21565: ABID97_RS21565 - ABC transporter permease, at 4,464,680 to 4,465,498
_RS21565
ABID97_RS21570: ABID97_RS21570 - ABC transporter permease, at 4,465,521 to 4,466,765
_RS21570
Position (kb) 4464
4465
4466 Strain fitness (log2 ratio) -1
0
1
2 at 4463.719 kb on + strand at 4463.956 kb on + strand, within ABID97_RS21560 at 4464.340 kb on + strand, within ABID97_RS21560 at 4464.380 kb on - strand, within ABID97_RS21560 at 4464.455 kb on - strand, within ABID97_RS21560 at 4464.455 kb on - strand, within ABID97_RS21560 at 4465.068 kb on + strand, within ABID97_RS21565 at 4465.068 kb on + strand, within ABID97_RS21565 at 4465.098 kb on + strand, within ABID97_RS21565 at 4465.104 kb on + strand, within ABID97_RS21565 at 4465.105 kb on - strand, within ABID97_RS21565 at 4465.105 kb on - strand, within ABID97_RS21565 at 4465.654 kb on + strand, within ABID97_RS21570 at 4465.655 kb on - strand, within ABID97_RS21570 at 4465.655 kb on - strand, within ABID97_RS21570 at 4465.655 kb on - strand, within ABID97_RS21570 at 4465.655 kb on - strand, within ABID97_RS21570 at 4465.655 kb on - strand, within ABID97_RS21570 at 4465.658 kb on - strand, within ABID97_RS21570 at 4465.705 kb on + strand, within ABID97_RS21570 at 4465.705 kb on + strand, within ABID97_RS21570 at 4465.706 kb on - strand, within ABID97_RS21570 at 4465.759 kb on + strand, within ABID97_RS21570 at 4465.775 kb on - strand, within ABID97_RS21570
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 4,463,719 + -0.3 4,463,956 + ABID97_RS21560 0.25 -0.5 4,464,340 + ABID97_RS21560 0.66 -0.0 4,464,380 - ABID97_RS21560 0.70 -0.3 4,464,455 - ABID97_RS21560 0.78 -0.3 4,464,455 - ABID97_RS21560 0.78 +0.3 4,465,068 + ABID97_RS21565 0.47 -1.0 4,465,068 + ABID97_RS21565 0.47 -0.7 4,465,098 + ABID97_RS21565 0.51 -0.9 4,465,104 + ABID97_RS21565 0.52 +0.4 4,465,105 - ABID97_RS21565 0.52 -0.7 4,465,105 - ABID97_RS21565 0.52 -0.6 4,465,654 + ABID97_RS21570 0.11 -0.5 4,465,655 - ABID97_RS21570 0.11 -0.2 4,465,655 - ABID97_RS21570 0.11 +2.7 4,465,655 - ABID97_RS21570 0.11 -0.1 4,465,655 - ABID97_RS21570 0.11 +0.2 4,465,655 - ABID97_RS21570 0.11 -0.6 4,465,658 - ABID97_RS21570 0.11 +0.8 4,465,705 + ABID97_RS21570 0.15 +0.5 4,465,705 + ABID97_RS21570 0.15 -0.9 4,465,706 - ABID97_RS21570 0.15 -0.0 4,465,759 + ABID97_RS21570 0.19 -0.3 4,465,775 - ABID97_RS21570 0.20 +1.1
Or see this region's nucleotide sequence