Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19780 and ABID97_RS19785 overlap by 4 nucleotides ABID97_RS19785 and ABID97_RS19790 are separated by 311 nucleotides ABID97_RS19790 and ABID97_RS19795 are separated by 1 nucleotides ABID97_RS19795 and ABID97_RS19800 are separated by 105 nucleotides
ABID97_RS19780: ABID97_RS19780 - hypothetical protein, at 4,085,830 to 4,086,204
_RS19780
ABID97_RS19785: ABID97_RS19785 - hypothetical protein, at 4,086,201 to 4,086,623
_RS19785
ABID97_RS19790: ABID97_RS19790 - hypothetical protein, at 4,086,935 to 4,087,321
_RS19790
ABID97_RS19795: ABID97_RS19795 - hypothetical protein, at 4,087,323 to 4,087,463
_RS19795
ABID97_RS19800: ABID97_RS19800 - MFS transporter, at 4,087,569 to 4,088,759
_RS19800
Position (kb) 4086
4087
4088 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4085.959 kb on + strand, within ABID97_RS19780 at 4085.960 kb on - strand, within ABID97_RS19780 at 4086.298 kb on - strand, within ABID97_RS19785 at 4086.306 kb on + strand, within ABID97_RS19785 at 4086.306 kb on + strand, within ABID97_RS19785 at 4086.306 kb on + strand, within ABID97_RS19785 at 4086.314 kb on - strand, within ABID97_RS19785 at 4086.357 kb on + strand, within ABID97_RS19785 at 4086.472 kb on + strand, within ABID97_RS19785 at 4086.473 kb on - strand, within ABID97_RS19785 at 4086.532 kb on + strand, within ABID97_RS19785 at 4086.533 kb on - strand, within ABID97_RS19785 at 4086.568 kb on + strand, within ABID97_RS19785 at 4086.569 kb on - strand, within ABID97_RS19785 at 4086.615 kb on - strand at 4086.838 kb on + strand at 4086.838 kb on + strand at 4086.839 kb on - strand at 4086.839 kb on - strand at 4086.839 kb on - strand at 4086.839 kb on - strand at 4086.839 kb on - strand at 4087.038 kb on + strand, within ABID97_RS19790 at 4087.038 kb on + strand, within ABID97_RS19790 at 4087.038 kb on + strand, within ABID97_RS19790 at 4087.039 kb on - strand, within ABID97_RS19790 at 4087.071 kb on + strand, within ABID97_RS19790 at 4087.072 kb on - strand, within ABID97_RS19790 at 4087.072 kb on - strand, within ABID97_RS19790 at 4087.072 kb on - strand, within ABID97_RS19790 at 4087.072 kb on - strand, within ABID97_RS19790 at 4087.072 kb on - strand, within ABID97_RS19790 at 4087.072 kb on - strand, within ABID97_RS19790 at 4087.072 kb on - strand, within ABID97_RS19790 at 4087.173 kb on + strand, within ABID97_RS19790 at 4087.173 kb on + strand, within ABID97_RS19790 at 4087.173 kb on + strand, within ABID97_RS19790 at 4087.174 kb on - strand, within ABID97_RS19790 at 4087.174 kb on - strand, within ABID97_RS19790 at 4087.174 kb on - strand, within ABID97_RS19790 at 4087.176 kb on + strand, within ABID97_RS19790 at 4087.176 kb on + strand, within ABID97_RS19790 at 4087.176 kb on + strand, within ABID97_RS19790 at 4087.177 kb on - strand, within ABID97_RS19790 at 4087.177 kb on - strand, within ABID97_RS19790 at 4087.260 kb on + strand, within ABID97_RS19790 at 4087.260 kb on + strand, within ABID97_RS19790 at 4087.374 kb on - strand, within ABID97_RS19795 at 4087.377 kb on + strand, within ABID97_RS19795 at 4087.377 kb on + strand, within ABID97_RS19795 at 4087.378 kb on - strand, within ABID97_RS19795 at 4087.378 kb on - strand, within ABID97_RS19795 at 4087.378 kb on - strand, within ABID97_RS19795 at 4087.378 kb on - strand, within ABID97_RS19795 at 4087.498 kb on + strand at 4087.498 kb on + strand at 4087.519 kb on - strand at 4087.533 kb on + strand at 4087.729 kb on + strand, within ABID97_RS19800 at 4088.056 kb on + strand, within ABID97_RS19800 at 4088.075 kb on + strand, within ABID97_RS19800 at 4088.075 kb on - strand, within ABID97_RS19800
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 4,085,959 + ABID97_RS19780 0.34 -0.5 4,085,960 - ABID97_RS19780 0.35 +0.8 4,086,298 - ABID97_RS19785 0.23 +0.2 4,086,306 + ABID97_RS19785 0.25 -0.2 4,086,306 + ABID97_RS19785 0.25 -0.8 4,086,306 + ABID97_RS19785 0.25 +0.7 4,086,314 - ABID97_RS19785 0.27 +0.2 4,086,357 + ABID97_RS19785 0.37 +0.2 4,086,472 + ABID97_RS19785 0.64 -0.7 4,086,473 - ABID97_RS19785 0.64 -0.4 4,086,532 + ABID97_RS19785 0.78 -0.3 4,086,533 - ABID97_RS19785 0.78 -0.1 4,086,568 + ABID97_RS19785 0.87 -0.8 4,086,569 - ABID97_RS19785 0.87 -0.1 4,086,615 - -0.1 4,086,838 + +0.1 4,086,838 + +0.2 4,086,839 - -0.0 4,086,839 - -0.2 4,086,839 - -1.9 4,086,839 - -0.6 4,086,839 - -0.3 4,087,038 + ABID97_RS19790 0.27 -1.3 4,087,038 + ABID97_RS19790 0.27 -1.6 4,087,038 + ABID97_RS19790 0.27 -2.1 4,087,039 - ABID97_RS19790 0.27 -2.9 4,087,071 + ABID97_RS19790 0.35 -1.9 4,087,072 - ABID97_RS19790 0.35 +0.1 4,087,072 - ABID97_RS19790 0.35 -2.7 4,087,072 - ABID97_RS19790 0.35 -2.2 4,087,072 - ABID97_RS19790 0.35 -3.4 4,087,072 - ABID97_RS19790 0.35 -2.4 4,087,072 - ABID97_RS19790 0.35 -2.2 4,087,072 - ABID97_RS19790 0.35 -2.5 4,087,173 + ABID97_RS19790 0.61 -0.9 4,087,173 + ABID97_RS19790 0.61 -1.5 4,087,173 + ABID97_RS19790 0.61 -3.2 4,087,174 - ABID97_RS19790 0.62 -3.2 4,087,174 - ABID97_RS19790 0.62 -0.7 4,087,174 - ABID97_RS19790 0.62 -1.1 4,087,176 + ABID97_RS19790 0.62 -0.6 4,087,176 + ABID97_RS19790 0.62 -0.6 4,087,176 + ABID97_RS19790 0.62 -3.6 4,087,177 - ABID97_RS19790 0.63 -3.0 4,087,177 - ABID97_RS19790 0.63 -3.3 4,087,260 + ABID97_RS19790 0.84 -2.6 4,087,260 + ABID97_RS19790 0.84 -2.3 4,087,374 - ABID97_RS19795 0.36 -1.7 4,087,377 + ABID97_RS19795 0.38 -0.9 4,087,377 + ABID97_RS19795 0.38 -0.9 4,087,378 - ABID97_RS19795 0.39 -0.8 4,087,378 - ABID97_RS19795 0.39 -1.9 4,087,378 - ABID97_RS19795 0.39 -1.8 4,087,378 - ABID97_RS19795 0.39 -3.0 4,087,498 + -2.2 4,087,498 + -1.3 4,087,519 - -0.1 4,087,533 + -1.6 4,087,729 + ABID97_RS19800 0.13 -1.3 4,088,056 + ABID97_RS19800 0.41 -0.8 4,088,075 + ABID97_RS19800 0.42 +1.1 4,088,075 - ABID97_RS19800 0.42 +0.1
Or see this region's nucleotide sequence