Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17365 and ABID97_RS17370 are separated by 22 nucleotides ABID97_RS17370 and ABID97_RS17375 are separated by 64 nucleotides ABID97_RS17375 and ABID97_RS17380 overlap by 4 nucleotides ABID97_RS17380 and ABID97_RS17385 are separated by 28 nucleotides
ABID97_RS17365: ABID97_RS17365 - LysR family transcriptional regulator, at 3,590,254 to 3,591,168
_RS17365
ABID97_RS17370: ABID97_RS17370 - OsmC family protein, at 3,591,191 to 3,591,667
_RS17370
ABID97_RS17375: ABID97_RS17375 - LrgB family protein, at 3,591,732 to 3,592,460
_RS17375
ABID97_RS17380: ABID97_RS17380 - CidA/LrgA family protein, at 3,592,457 to 3,592,810
_RS17380
ABID97_RS17385: ABID97_RS17385 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 3,592,839 to 3,593,870
_RS17385
Position (kb)
3591
3592
3593 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3590.830 kb on + strand, within ABID97_RS17365 at 3590.831 kb on - strand, within ABID97_RS17365 at 3591.408 kb on + strand, within ABID97_RS17370 at 3591.589 kb on + strand, within ABID97_RS17370 at 3591.589 kb on + strand, within ABID97_RS17370 at 3591.589 kb on + strand, within ABID97_RS17370 at 3591.589 kb on + strand, within ABID97_RS17370 at 3591.590 kb on - strand, within ABID97_RS17370 at 3591.603 kb on + strand, within ABID97_RS17370 at 3591.603 kb on + strand, within ABID97_RS17370 at 3591.604 kb on - strand, within ABID97_RS17370 at 3591.604 kb on - strand, within ABID97_RS17370 at 3591.657 kb on + strand at 3591.702 kb on - strand at 3591.702 kb on - strand at 3592.186 kb on + strand, within ABID97_RS17375 at 3592.255 kb on + strand, within ABID97_RS17375 at 3592.256 kb on - strand, within ABID97_RS17375 at 3592.256 kb on - strand, within ABID97_RS17375 at 3592.256 kb on - strand, within ABID97_RS17375 at 3592.375 kb on + strand, within ABID97_RS17375 at 3592.375 kb on + strand, within ABID97_RS17375 at 3592.375 kb on + strand, within ABID97_RS17375 at 3593.258 kb on - strand, within ABID97_RS17385 at 3593.258 kb on - strand, within ABID97_RS17385
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 3,590,830 + ABID97_RS17365 0.63 -0.6 3,590,831 - ABID97_RS17365 0.63 -2.6 3,591,408 + ABID97_RS17370 0.45 -0.1 3,591,589 + ABID97_RS17370 0.83 -0.5 3,591,589 + ABID97_RS17370 0.83 -0.9 3,591,589 + ABID97_RS17370 0.83 -0.1 3,591,589 + ABID97_RS17370 0.83 -0.4 3,591,590 - ABID97_RS17370 0.84 +0.3 3,591,603 + ABID97_RS17370 0.86 +0.2 3,591,603 + ABID97_RS17370 0.86 -0.1 3,591,604 - ABID97_RS17370 0.87 -1.4 3,591,604 - ABID97_RS17370 0.87 -0.0 3,591,657 + +0.8 3,591,702 - +0.3 3,591,702 - -1.5 3,592,186 + ABID97_RS17375 0.62 +0.4 3,592,255 + ABID97_RS17375 0.72 -0.1 3,592,256 - ABID97_RS17375 0.72 -0.1 3,592,256 - ABID97_RS17375 0.72 -0.9 3,592,256 - ABID97_RS17375 0.72 -0.6 3,592,375 + ABID97_RS17375 0.88 +0.2 3,592,375 + ABID97_RS17375 0.88 -0.5 3,592,375 + ABID97_RS17375 0.88 -0.4 3,593,258 - ABID97_RS17385 0.41 -3.2 3,593,258 - ABID97_RS17385 0.41 -0.6
Or see this region's nucleotide sequence