Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17375

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17365 and ABID97_RS17370 are separated by 22 nucleotidesABID97_RS17370 and ABID97_RS17375 are separated by 64 nucleotidesABID97_RS17375 and ABID97_RS17380 overlap by 4 nucleotidesABID97_RS17380 and ABID97_RS17385 are separated by 28 nucleotides ABID97_RS17365: ABID97_RS17365 - LysR family transcriptional regulator, at 3,590,254 to 3,591,168 _RS17365 ABID97_RS17370: ABID97_RS17370 - OsmC family protein, at 3,591,191 to 3,591,667 _RS17370 ABID97_RS17375: ABID97_RS17375 - LrgB family protein, at 3,591,732 to 3,592,460 _RS17375 ABID97_RS17380: ABID97_RS17380 - CidA/LrgA family protein, at 3,592,457 to 3,592,810 _RS17380 ABID97_RS17385: ABID97_RS17385 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 3,592,839 to 3,593,870 _RS17385 Position (kb) 3591 3592 3593Strain fitness (log2 ratio) -3 -2 -1 0 1at 3590.830 kb on + strand, within ABID97_RS17365at 3590.831 kb on - strand, within ABID97_RS17365at 3591.408 kb on + strand, within ABID97_RS17370at 3591.589 kb on + strand, within ABID97_RS17370at 3591.589 kb on + strand, within ABID97_RS17370at 3591.589 kb on + strand, within ABID97_RS17370at 3591.589 kb on + strand, within ABID97_RS17370at 3591.590 kb on - strand, within ABID97_RS17370at 3591.603 kb on + strand, within ABID97_RS17370at 3591.603 kb on + strand, within ABID97_RS17370at 3591.604 kb on - strand, within ABID97_RS17370at 3591.604 kb on - strand, within ABID97_RS17370at 3591.657 kb on + strandat 3591.702 kb on - strandat 3591.702 kb on - strandat 3592.186 kb on + strand, within ABID97_RS17375at 3592.255 kb on + strand, within ABID97_RS17375at 3592.256 kb on - strand, within ABID97_RS17375at 3592.256 kb on - strand, within ABID97_RS17375at 3592.256 kb on - strand, within ABID97_RS17375at 3592.375 kb on + strand, within ABID97_RS17375at 3592.375 kb on + strand, within ABID97_RS17375at 3592.375 kb on + strand, within ABID97_RS17375at 3593.258 kb on - strand, within ABID97_RS17385at 3593.258 kb on - strand, within ABID97_RS17385

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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3,590,830 + ABID97_RS17365 0.63 -0.6
3,590,831 - ABID97_RS17365 0.63 -2.6
3,591,408 + ABID97_RS17370 0.45 -0.1
3,591,589 + ABID97_RS17370 0.83 -0.5
3,591,589 + ABID97_RS17370 0.83 -0.9
3,591,589 + ABID97_RS17370 0.83 -0.1
3,591,589 + ABID97_RS17370 0.83 -0.4
3,591,590 - ABID97_RS17370 0.84 +0.3
3,591,603 + ABID97_RS17370 0.86 +0.2
3,591,603 + ABID97_RS17370 0.86 -0.1
3,591,604 - ABID97_RS17370 0.87 -1.4
3,591,604 - ABID97_RS17370 0.87 -0.0
3,591,657 + +0.8
3,591,702 - +0.3
3,591,702 - -1.5
3,592,186 + ABID97_RS17375 0.62 +0.4
3,592,255 + ABID97_RS17375 0.72 -0.1
3,592,256 - ABID97_RS17375 0.72 -0.1
3,592,256 - ABID97_RS17375 0.72 -0.9
3,592,256 - ABID97_RS17375 0.72 -0.6
3,592,375 + ABID97_RS17375 0.88 +0.2
3,592,375 + ABID97_RS17375 0.88 -0.5
3,592,375 + ABID97_RS17375 0.88 -0.4
3,593,258 - ABID97_RS17385 0.41 -3.2
3,593,258 - ABID97_RS17385 0.41 -0.6

Or see this region's nucleotide sequence