Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17080

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17070 and ABID97_RS17075 are separated by 63 nucleotidesABID97_RS17075 and ABID97_RS17080 are separated by 8 nucleotidesABID97_RS17080 and ABID97_RS17085 are separated by 1 nucleotidesABID97_RS17085 and ABID97_RS17090 are separated by 10 nucleotides ABID97_RS17070: ABID97_RS17070 - transcription elongation factor GreA, at 3,526,837 to 3,527,313 _RS17070 ABID97_RS17075: ABID97_RS17075 - Kdo hydroxylase family protein, at 3,527,377 to 3,528,246 _RS17075 ABID97_RS17080: ABID97_RS17080 - carbamoyl-phosphate synthase large subunit, at 3,528,255 to 3,531,503 _RS17080 ABID97_RS17085: ABID97_RS17085 - ORF6N domain-containing protein, at 3,531,505 to 3,532,044 _RS17085 ABID97_RS17090: ABID97_RS17090 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 3,532,055 to 3,533,239 _RS17090 Position (kb) 3528 3529 3530 3531 3532Strain fitness (log2 ratio) -1 0 1 2 3at 3527.327 kb on + strandat 3527.327 kb on + strandat 3527.438 kb on + strandat 3527.438 kb on + strandat 3527.438 kb on + strandat 3527.439 kb on - strandat 3527.439 kb on - strandat 3527.480 kb on + strand, within ABID97_RS17075at 3527.480 kb on + strand, within ABID97_RS17075at 3527.480 kb on + strand, within ABID97_RS17075at 3527.480 kb on + strand, within ABID97_RS17075at 3527.481 kb on - strand, within ABID97_RS17075at 3527.481 kb on - strand, within ABID97_RS17075at 3527.481 kb on - strand, within ABID97_RS17075at 3527.481 kb on - strand, within ABID97_RS17075at 3527.481 kb on - strand, within ABID97_RS17075at 3527.580 kb on - strand, within ABID97_RS17075at 3527.630 kb on + strand, within ABID97_RS17075at 3527.693 kb on + strand, within ABID97_RS17075at 3527.693 kb on + strand, within ABID97_RS17075at 3527.694 kb on - strand, within ABID97_RS17075at 3527.694 kb on - strand, within ABID97_RS17075at 3527.814 kb on - strand, within ABID97_RS17075at 3527.814 kb on - strand, within ABID97_RS17075at 3527.903 kb on + strand, within ABID97_RS17075at 3527.904 kb on - strand, within ABID97_RS17075at 3527.937 kb on - strand, within ABID97_RS17075at 3527.937 kb on - strand, within ABID97_RS17075at 3527.937 kb on - strand, within ABID97_RS17075at 3528.149 kb on + strand, within ABID97_RS17075at 3528.150 kb on - strand, within ABID97_RS17075at 3531.511 kb on - strandat 3531.511 kb on - strandat 3531.543 kb on - strandat 3531.590 kb on - strand, within ABID97_RS17085at 3531.942 kb on - strand, within ABID97_RS17085at 3531.993 kb on - strandat 3531.993 kb on - strandat 3531.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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3,527,327 + -0.6
3,527,327 + -0.4
3,527,438 + +1.1
3,527,438 + +1.9
3,527,438 + +1.3
3,527,439 - +1.7
3,527,439 - +1.8
3,527,480 + ABID97_RS17075 0.12 +2.0
3,527,480 + ABID97_RS17075 0.12 +0.6
3,527,480 + ABID97_RS17075 0.12 +0.8
3,527,480 + ABID97_RS17075 0.12 +1.2
3,527,481 - ABID97_RS17075 0.12 +1.4
3,527,481 - ABID97_RS17075 0.12 +0.8
3,527,481 - ABID97_RS17075 0.12 +1.2
3,527,481 - ABID97_RS17075 0.12 +0.8
3,527,481 - ABID97_RS17075 0.12 +1.5
3,527,580 - ABID97_RS17075 0.23 -1.4
3,527,630 + ABID97_RS17075 0.29 +2.6
3,527,693 + ABID97_RS17075 0.36 +1.8
3,527,693 + ABID97_RS17075 0.36 +1.8
3,527,694 - ABID97_RS17075 0.36 +3.1
3,527,694 - ABID97_RS17075 0.36 +1.6
3,527,814 - ABID97_RS17075 0.50 +2.2
3,527,814 - ABID97_RS17075 0.50 +1.7
3,527,903 + ABID97_RS17075 0.60 +1.5
3,527,904 - ABID97_RS17075 0.61 +1.8
3,527,937 - ABID97_RS17075 0.64 +1.9
3,527,937 - ABID97_RS17075 0.64 +1.9
3,527,937 - ABID97_RS17075 0.64 +1.6
3,528,149 + ABID97_RS17075 0.89 +1.8
3,528,150 - ABID97_RS17075 0.89 +1.4
3,531,511 - -0.2
3,531,511 - -0.1
3,531,543 - +0.6
3,531,590 - ABID97_RS17085 0.16 +0.6
3,531,942 - ABID97_RS17085 0.81 -0.4
3,531,993 - -0.5
3,531,993 - -0.1
3,531,993 - -0.0

Or see this region's nucleotide sequence