Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13670

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13655 and ABID97_RS13660 overlap by 4 nucleotidesABID97_RS13660 and ABID97_RS13665 are separated by 7 nucleotidesABID97_RS13665 and ABID97_RS13670 are separated by 4 nucleotidesABID97_RS13670 and ABID97_RS13675 are separated by 30 nucleotidesABID97_RS13675 and ABID97_RS13680 are separated by 28 nucleotides ABID97_RS13655: ABID97_RS13655 - hydrogenase, at 2,843,560 to 2,844,063 _RS13655 ABID97_RS13660: ABID97_RS13660 - HypC/HybG/HupF family hydrogenase formation chaperone, at 2,844,060 to 2,844,404 _RS13660 ABID97_RS13665: ABID97_RS13665 - HyaD/HybD family hydrogenase maturation endopeptidase, at 2,844,412 to 2,845,047 _RS13665 ABID97_RS13670: ABID97_RS13670 - Ni/Fe-hydrogenase, b-type cytochrome subunit, at 2,845,052 to 2,845,780 _RS13670 ABID97_RS13675: ABID97_RS13675 - HupE/UreJ family protein, at 2,845,811 to 2,846,428 _RS13675 ABID97_RS13680: ABID97_RS13680 - nickel-dependent hydrogenase large subunit, at 2,846,457 to 2,848,313 _RS13680 Position (kb) 2845 2846Strain fitness (log2 ratio) -2 -1 0 1at 2844.498 kb on - strand, within ABID97_RS13665at 2845.134 kb on + strand, within ABID97_RS13670at 2845.134 kb on + strand, within ABID97_RS13670at 2845.193 kb on + strand, within ABID97_RS13670at 2845.365 kb on + strand, within ABID97_RS13670at 2845.429 kb on - strand, within ABID97_RS13670at 2845.495 kb on - strand, within ABID97_RS13670at 2845.690 kb on - strand, within ABID97_RS13670at 2845.695 kb on + strand, within ABID97_RS13670at 2845.696 kb on - strand, within ABID97_RS13670at 2846.675 kb on - strand, within ABID97_RS13680

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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2,844,498 - ABID97_RS13665 0.14 -0.7
2,845,134 + ABID97_RS13670 0.11 -0.7
2,845,134 + ABID97_RS13670 0.11 -0.1
2,845,193 + ABID97_RS13670 0.19 -0.0
2,845,365 + ABID97_RS13670 0.43 -0.8
2,845,429 - ABID97_RS13670 0.52 -0.9
2,845,495 - ABID97_RS13670 0.61 -0.0
2,845,690 - ABID97_RS13670 0.88 -2.0
2,845,695 + ABID97_RS13670 0.88 +0.5
2,845,696 - ABID97_RS13670 0.88 -0.7
2,846,675 - ABID97_RS13680 0.12 -0.6

Or see this region's nucleotide sequence