Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13655 and ABID97_RS13660 overlap by 4 nucleotides ABID97_RS13660 and ABID97_RS13665 are separated by 7 nucleotides ABID97_RS13665 and ABID97_RS13670 are separated by 4 nucleotides ABID97_RS13670 and ABID97_RS13675 are separated by 30 nucleotides ABID97_RS13675 and ABID97_RS13680 are separated by 28 nucleotides
ABID97_RS13655: ABID97_RS13655 - hydrogenase, at 2,843,560 to 2,844,063
_RS13655
ABID97_RS13660: ABID97_RS13660 - HypC/HybG/HupF family hydrogenase formation chaperone, at 2,844,060 to 2,844,404
_RS13660
ABID97_RS13665: ABID97_RS13665 - HyaD/HybD family hydrogenase maturation endopeptidase, at 2,844,412 to 2,845,047
_RS13665
ABID97_RS13670: ABID97_RS13670 - Ni/Fe-hydrogenase, b-type cytochrome subunit, at 2,845,052 to 2,845,780
_RS13670
ABID97_RS13675: ABID97_RS13675 - HupE/UreJ family protein, at 2,845,811 to 2,846,428
_RS13675
ABID97_RS13680: ABID97_RS13680 - nickel-dependent hydrogenase large subunit, at 2,846,457 to 2,848,313
_RS13680
Position (kb)
2845
2846 Strain fitness (log2 ratio)
-2
-1
0
1 at 2844.498 kb on - strand, within ABID97_RS13665 at 2845.134 kb on + strand, within ABID97_RS13670 at 2845.134 kb on + strand, within ABID97_RS13670 at 2845.193 kb on + strand, within ABID97_RS13670 at 2845.365 kb on + strand, within ABID97_RS13670 at 2845.429 kb on - strand, within ABID97_RS13670 at 2845.495 kb on - strand, within ABID97_RS13670 at 2845.690 kb on - strand, within ABID97_RS13670 at 2845.695 kb on + strand, within ABID97_RS13670 at 2845.696 kb on - strand, within ABID97_RS13670 at 2846.675 kb on - strand, within ABID97_RS13680
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 2,844,498 - ABID97_RS13665 0.14 -0.7 2,845,134 + ABID97_RS13670 0.11 -0.7 2,845,134 + ABID97_RS13670 0.11 -0.1 2,845,193 + ABID97_RS13670 0.19 -0.0 2,845,365 + ABID97_RS13670 0.43 -0.8 2,845,429 - ABID97_RS13670 0.52 -0.9 2,845,495 - ABID97_RS13670 0.61 -0.0 2,845,690 - ABID97_RS13670 0.88 -2.0 2,845,695 + ABID97_RS13670 0.88 +0.5 2,845,696 - ABID97_RS13670 0.88 -0.7 2,846,675 - ABID97_RS13680 0.12 -0.6
Or see this region's nucleotide sequence