Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07620

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07615 and ABID97_RS07620 overlap by 17 nucleotidesABID97_RS07620 and ABID97_RS07625 overlap by 4 nucleotidesABID97_RS07625 and ABID97_RS07630 overlap by 4 nucleotides ABID97_RS07615: ABID97_RS07615 - ATP-binding protein, at 1,608,083 to 1,609,492 _RS07615 ABID97_RS07620: ABID97_RS07620 - SURF1 family protein, at 1,609,476 to 1,610,318 _RS07620 ABID97_RS07625: ABID97_RS07625 - cytochrome o ubiquinol oxidase subunit IV, at 1,610,315 to 1,610,722 _RS07625 ABID97_RS07630: ABID97_RS07630 - cytochrome o ubiquinol oxidase subunit III, at 1,610,719 to 1,611,384 _RS07630 Position (kb) 1609 1610 1611Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1608.966 kb on + strand, within ABID97_RS07615at 1608.966 kb on + strand, within ABID97_RS07615at 1609.120 kb on - strand, within ABID97_RS07615at 1609.158 kb on + strand, within ABID97_RS07615at 1609.158 kb on + strand, within ABID97_RS07615at 1609.616 kb on - strand, within ABID97_RS07620at 1609.717 kb on + strand, within ABID97_RS07620at 1609.717 kb on + strand, within ABID97_RS07620at 1609.717 kb on + strand, within ABID97_RS07620at 1609.718 kb on - strand, within ABID97_RS07620at 1610.047 kb on - strand, within ABID97_RS07620at 1610.047 kb on - strand, within ABID97_RS07620at 1610.186 kb on + strand, within ABID97_RS07620at 1610.373 kb on + strand, within ABID97_RS07625at 1610.373 kb on + strand, within ABID97_RS07625at 1610.373 kb on + strand, within ABID97_RS07625at 1610.373 kb on + strand, within ABID97_RS07625at 1610.374 kb on - strandat 1610.481 kb on + strand, within ABID97_RS07625at 1610.481 kb on + strand, within ABID97_RS07625at 1610.481 kb on + strand, within ABID97_RS07625at 1610.623 kb on - strand, within ABID97_RS07625at 1610.623 kb on - strand, within ABID97_RS07625at 1610.985 kb on - strand, within ABID97_RS07630at 1611.089 kb on + strand, within ABID97_RS07630at 1611.177 kb on - strand, within ABID97_RS07630

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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1,608,966 + ABID97_RS07615 0.63 -1.8
1,608,966 + ABID97_RS07615 0.63 -1.1
1,609,120 - ABID97_RS07615 0.74 +0.7
1,609,158 + ABID97_RS07615 0.76 -3.0
1,609,158 + ABID97_RS07615 0.76 -4.0
1,609,616 - ABID97_RS07620 0.17 +0.7
1,609,717 + ABID97_RS07620 0.29 +0.3
1,609,717 + ABID97_RS07620 0.29 -0.2
1,609,717 + ABID97_RS07620 0.29 +0.2
1,609,718 - ABID97_RS07620 0.29 +0.6
1,610,047 - ABID97_RS07620 0.68 +1.8
1,610,047 - ABID97_RS07620 0.68 +0.7
1,610,186 + ABID97_RS07620 0.84 -1.0
1,610,373 + ABID97_RS07625 0.14 +0.4
1,610,373 + ABID97_RS07625 0.14 +1.0
1,610,373 + ABID97_RS07625 0.14 +0.3
1,610,373 + ABID97_RS07625 0.14 -1.0
1,610,374 - +1.7
1,610,481 + ABID97_RS07625 0.41 +1.0
1,610,481 + ABID97_RS07625 0.41 +0.8
1,610,481 + ABID97_RS07625 0.41 +0.3
1,610,623 - ABID97_RS07625 0.75 +0.1
1,610,623 - ABID97_RS07625 0.75 -0.2
1,610,985 - ABID97_RS07630 0.40 +0.1
1,611,089 + ABID97_RS07630 0.56 -0.6
1,611,177 - ABID97_RS07630 0.69 +0.7

Or see this region's nucleotide sequence