Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06995

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06980 and ABID97_RS06985 overlap by 4 nucleotidesABID97_RS06985 and ABID97_RS06990 overlap by 26 nucleotidesABID97_RS06990 and ABID97_RS06995 are separated by 49 nucleotidesABID97_RS06995 and ABID97_RS07000 are separated by 27 nucleotides ABID97_RS06980: ABID97_RS06980 - type II secretion system minor pseudopilin GspI, at 1,478,678 to 1,479,052 _RS06980 ABID97_RS06985: ABID97_RS06985 - GspH/FimT family pseudopilin, at 1,479,049 to 1,479,513 _RS06985 ABID97_RS06990: ABID97_RS06990 - type II secretion system major pseudopilin GspG, at 1,479,488 to 1,479,928 _RS06990 ABID97_RS06995: ABID97_RS06995 - type II secretion system protein N, at 1,479,978 to 1,480,589 _RS06995 ABID97_RS07000: ABID97_RS07000 - threonine ammonia-lyase, biosynthetic, at 1,480,617 to 1,482,230 _RS07000 Position (kb) 1479 1480 1481Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1479.591 kb on + strand, within ABID97_RS06990at 1479.591 kb on + strand, within ABID97_RS06990at 1479.591 kb on + strand, within ABID97_RS06990at 1479.592 kb on - strand, within ABID97_RS06990at 1479.592 kb on - strand, within ABID97_RS06990at 1479.592 kb on - strand, within ABID97_RS06990at 1479.592 kb on - strand, within ABID97_RS06990at 1479.592 kb on - strand, within ABID97_RS06990at 1479.592 kb on - strand, within ABID97_RS06990at 1479.592 kb on - strand, within ABID97_RS06990at 1479.592 kb on - strand, within ABID97_RS06990at 1479.592 kb on - strand, within ABID97_RS06990at 1479.592 kb on - strand, within ABID97_RS06990at 1479.592 kb on - strand, within ABID97_RS06990at 1479.598 kb on - strand, within ABID97_RS06990at 1479.714 kb on + strand, within ABID97_RS06990at 1479.880 kb on + strand, within ABID97_RS06990at 1479.880 kb on + strand, within ABID97_RS06990at 1479.880 kb on + strand, within ABID97_RS06990at 1479.967 kb on - strandat 1479.967 kb on - strandat 1479.990 kb on + strandat 1480.019 kb on + strandat 1480.019 kb on + strandat 1480.020 kb on - strandat 1480.332 kb on + strand, within ABID97_RS06995at 1480.332 kb on + strand, within ABID97_RS06995at 1480.333 kb on - strand, within ABID97_RS06995at 1480.333 kb on - strand, within ABID97_RS06995at 1480.333 kb on - strand, within ABID97_RS06995at 1480.333 kb on - strand, within ABID97_RS06995at 1480.587 kb on + strandat 1480.587 kb on + strandat 1480.587 kb on + strandat 1480.750 kb on + strandat 1480.751 kb on - strandat 1481.056 kb on + strandat 1481.314 kb on + strand, within ABID97_RS07000at 1481.314 kb on + strand, within ABID97_RS07000at 1481.314 kb on + strand, within ABID97_RS07000at 1481.315 kb on - strand, within ABID97_RS07000at 1481.315 kb on - strand, within ABID97_RS07000at 1481.315 kb on - strand, within ABID97_RS07000at 1481.425 kb on + strand, within ABID97_RS07000at 1481.425 kb on + strand, within ABID97_RS07000at 1481.425 kb on + strand, within ABID97_RS07000at 1481.425 kb on + strand, within ABID97_RS07000at 1481.425 kb on + strand, within ABID97_RS07000at 1481.426 kb on - strand, within ABID97_RS07000

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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1,479,591 + ABID97_RS06990 0.23 +0.5
1,479,591 + ABID97_RS06990 0.23 +0.9
1,479,591 + ABID97_RS06990 0.23 +0.2
1,479,592 - ABID97_RS06990 0.24 +0.1
1,479,592 - ABID97_RS06990 0.24 -0.0
1,479,592 - ABID97_RS06990 0.24 +1.1
1,479,592 - ABID97_RS06990 0.24 +0.7
1,479,592 - ABID97_RS06990 0.24 +2.0
1,479,592 - ABID97_RS06990 0.24 +0.3
1,479,592 - ABID97_RS06990 0.24 +0.1
1,479,592 - ABID97_RS06990 0.24 -0.4
1,479,592 - ABID97_RS06990 0.24 +0.1
1,479,592 - ABID97_RS06990 0.24 +0.2
1,479,592 - ABID97_RS06990 0.24 -0.3
1,479,598 - ABID97_RS06990 0.25 +0.2
1,479,714 + ABID97_RS06990 0.51 -0.2
1,479,880 + ABID97_RS06990 0.89 +0.8
1,479,880 + ABID97_RS06990 0.89 -0.4
1,479,880 + ABID97_RS06990 0.89 -0.8
1,479,967 - +0.5
1,479,967 - +0.9
1,479,990 + -0.3
1,480,019 + -0.3
1,480,019 + +0.1
1,480,020 - -1.1
1,480,332 + ABID97_RS06995 0.58 -0.0
1,480,332 + ABID97_RS06995 0.58 +1.7
1,480,333 - ABID97_RS06995 0.58 +0.2
1,480,333 - ABID97_RS06995 0.58 +0.2
1,480,333 - ABID97_RS06995 0.58 +0.7
1,480,333 - ABID97_RS06995 0.58 +0.4
1,480,587 + +0.1
1,480,587 + +1.0
1,480,587 + -0.1
1,480,750 + +0.2
1,480,751 - -1.1
1,481,056 + +3.3
1,481,314 + ABID97_RS07000 0.43 -0.5
1,481,314 + ABID97_RS07000 0.43 -0.9
1,481,314 + ABID97_RS07000 0.43 -1.1
1,481,315 - ABID97_RS07000 0.43 -0.3
1,481,315 - ABID97_RS07000 0.43 -0.8
1,481,315 - ABID97_RS07000 0.43 -2.3
1,481,425 + ABID97_RS07000 0.50 +1.2
1,481,425 + ABID97_RS07000 0.50 -1.5
1,481,425 + ABID97_RS07000 0.50 -0.8
1,481,425 + ABID97_RS07000 0.50 +0.2
1,481,425 + ABID97_RS07000 0.50 +0.1
1,481,426 - ABID97_RS07000 0.50 -2.0

Or see this region's nucleotide sequence