Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04580 and ABID97_RS04585 are separated by 123 nucleotides ABID97_RS04585 and ABID97_RS04590 are separated by 14 nucleotides ABID97_RS04590 and ABID97_RS04595 are separated by 20 nucleotides
ABID97_RS04580: ABID97_RS04580 - tripartite tricarboxylate transporter substrate binding protein, at 952,322 to 953,299
_RS04580
ABID97_RS04585: ABID97_RS04585 - leucine--tRNA ligase, at 953,423 to 956,053
_RS04585
ABID97_RS04590: ABID97_RS04590 - LPS assembly lipoprotein LptE, at 956,068 to 956,589
_RS04590
ABID97_RS04595: ABID97_RS04595 - DNA polymerase III subunit delta, at 956,610 to 957,683
_RS04595
Position (kb) 953
954
955
956
957 Strain fitness (log2 ratio) -1
0
1 at 952.833 kb on + strand, within ABID97_RS04580 at 952.834 kb on - strand, within ABID97_RS04580 at 952.834 kb on - strand, within ABID97_RS04580 at 953.364 kb on - strand at 956.061 kb on + strand at 956.062 kb on - strand at 956.062 kb on - strand at 956.062 kb on - strand at 956.062 kb on - strand at 956.588 kb on - strand at 956.588 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 952,833 + ABID97_RS04580 0.52 +1.5 952,834 - ABID97_RS04580 0.52 +0.6 952,834 - ABID97_RS04580 0.52 -0.1 953,364 - +0.1 956,061 + -0.5 956,062 - +0.8 956,062 - +1.1 956,062 - +0.7 956,062 - +0.9 956,588 - +0.2 956,588 - -0.3
Or see this region's nucleotide sequence