Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03220 and ABID97_RS03225 are separated by 99 nucleotides ABID97_RS03225 and ABID97_RS03230 are separated by 16 nucleotides ABID97_RS03230 and ABID97_RS03235 overlap by 55 nucleotides
ABID97_RS03220: ABID97_RS03220 - CopD family protein, at 652,751 to 653,209
_RS03220
ABID97_RS03225: ABID97_RS03225 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 653,309 to 654,139
_RS03225
ABID97_RS03230: ABID97_RS03230 - uracil-DNA glycosylase family protein, at 654,156 to 654,785
_RS03230
ABID97_RS03235: ABID97_RS03235 - amidohydrolase, at 654,731 to 656,404
_RS03235
Position (kb) 654
655 Strain fitness (log2 ratio) -1
0
1 at 653.828 kb on + strand, within ABID97_RS03225 at 653.855 kb on + strand, within ABID97_RS03225 at 653.856 kb on - strand, within ABID97_RS03225 at 653.856 kb on - strand, within ABID97_RS03225 at 654.138 kb on - strand at 654.138 kb on - strand at 654.369 kb on + strand, within ABID97_RS03230 at 654.370 kb on - strand, within ABID97_RS03230 at 654.783 kb on + strand at 654.951 kb on + strand, within ABID97_RS03235 at 654.952 kb on - strand, within ABID97_RS03235 at 654.952 kb on - strand, within ABID97_RS03235 at 655.059 kb on + strand, within ABID97_RS03235 at 655.059 kb on + strand, within ABID97_RS03235 at 655.059 kb on + strand, within ABID97_RS03235 at 655.059 kb on + strand, within ABID97_RS03235 at 655.060 kb on - strand, within ABID97_RS03235 at 655.060 kb on - strand, within ABID97_RS03235 at 655.060 kb on - strand, within ABID97_RS03235 at 655.060 kb on - strand, within ABID97_RS03235 at 655.185 kb on + strand, within ABID97_RS03235 at 655.186 kb on - strand, within ABID97_RS03235 at 655.407 kb on + strand, within ABID97_RS03235 at 655.408 kb on - strand, within ABID97_RS03235 at 655.449 kb on + strand, within ABID97_RS03235 at 655.449 kb on + strand, within ABID97_RS03235 at 655.449 kb on + strand, within ABID97_RS03235 at 655.449 kb on + strand, within ABID97_RS03235 at 655.581 kb on + strand, within ABID97_RS03235 at 655.741 kb on - strand, within ABID97_RS03235
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 653,828 + ABID97_RS03225 0.62 +0.1 653,855 + ABID97_RS03225 0.66 -0.4 653,856 - ABID97_RS03225 0.66 -0.4 653,856 - ABID97_RS03225 0.66 +0.1 654,138 - -0.7 654,138 - -0.5 654,369 + ABID97_RS03230 0.34 -0.5 654,370 - ABID97_RS03230 0.34 +0.8 654,783 + +0.4 654,951 + ABID97_RS03235 0.13 -0.1 654,952 - ABID97_RS03235 0.13 -0.5 654,952 - ABID97_RS03235 0.13 +0.1 655,059 + ABID97_RS03235 0.20 +0.6 655,059 + ABID97_RS03235 0.20 -0.0 655,059 + ABID97_RS03235 0.20 -0.8 655,059 + ABID97_RS03235 0.20 -0.2 655,060 - ABID97_RS03235 0.20 -0.4 655,060 - ABID97_RS03235 0.20 +0.6 655,060 - ABID97_RS03235 0.20 +0.7 655,060 - ABID97_RS03235 0.20 -1.0 655,185 + ABID97_RS03235 0.27 +0.0 655,186 - ABID97_RS03235 0.27 -0.3 655,407 + ABID97_RS03235 0.40 -0.5 655,408 - ABID97_RS03235 0.40 -0.1 655,449 + ABID97_RS03235 0.43 -0.0 655,449 + ABID97_RS03235 0.43 +0.1 655,449 + ABID97_RS03235 0.43 -0.4 655,449 + ABID97_RS03235 0.43 +0.1 655,581 + ABID97_RS03235 0.51 +0.2 655,741 - ABID97_RS03235 0.60 -0.6
Or see this region's nucleotide sequence