Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02135

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02125 and ABID97_RS02130 overlap by 4 nucleotidesABID97_RS02130 and ABID97_RS02135 overlap by 4 nucleotidesABID97_RS02135 and ABID97_RS02140 are separated by 37 nucleotidesABID97_RS02140 and ABID97_RS02145 are separated by 5 nucleotides ABID97_RS02125: ABID97_RS02125 - PilC/PilY family type IV pilus protein, at 426,060 to 430,451 _RS02125 ABID97_RS02130: ABID97_RS02130 - type IV pilin protein, at 430,448 to 430,909 _RS02130 ABID97_RS02135: ABID97_RS02135 - GspH/FimT family pseudopilin, at 430,906 to 431,481 _RS02135 ABID97_RS02140: ABID97_RS02140 - sugar transferase, at 431,519 to 432,115 _RS02140 ABID97_RS02145: ABID97_RS02145 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 432,121 to 433,284 _RS02145 Position (kb) 430 431 432Strain fitness (log2 ratio) -1 0 1 2 3 4at 430.425 kb on + strandat 430.425 kb on + strandat 430.425 kb on + strandat 430.425 kb on + strandat 430.426 kb on - strandat 430.622 kb on + strand, within ABID97_RS02130at 430.622 kb on + strand, within ABID97_RS02130at 430.623 kb on - strand, within ABID97_RS02130at 430.624 kb on + strand, within ABID97_RS02130at 430.625 kb on - strand, within ABID97_RS02130at 430.643 kb on + strand, within ABID97_RS02130at 430.643 kb on + strand, within ABID97_RS02130at 430.643 kb on + strand, within ABID97_RS02130at 430.643 kb on + strand, within ABID97_RS02130at 430.643 kb on + strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.647 kb on + strand, within ABID97_RS02130at 430.839 kb on + strand, within ABID97_RS02130at 430.840 kb on - strand, within ABID97_RS02130at 430.840 kb on - strand, within ABID97_RS02130at 430.840 kb on - strand, within ABID97_RS02130at 430.852 kb on + strand, within ABID97_RS02130at 431.165 kb on + strand, within ABID97_RS02135at 431.165 kb on + strand, within ABID97_RS02135at 431.236 kb on + strand, within ABID97_RS02135at 431.236 kb on + strand, within ABID97_RS02135at 431.237 kb on - strand, within ABID97_RS02135at 431.281 kb on + strand, within ABID97_RS02135at 431.479 kb on + strandat 431.480 kb on - strandat 431.545 kb on + strandat 431.545 kb on + strandat 431.546 kb on - strandat 431.546 kb on - strandat 431.550 kb on - strandat 431.592 kb on + strand, within ABID97_RS02140at 431.592 kb on + strand, within ABID97_RS02140at 431.592 kb on + strand, within ABID97_RS02140at 431.593 kb on - strand, within ABID97_RS02140at 431.593 kb on - strand, within ABID97_RS02140at 431.593 kb on - strand, within ABID97_RS02140at 431.755 kb on + strand, within ABID97_RS02140at 431.755 kb on + strand, within ABID97_RS02140at 431.756 kb on - strand, within ABID97_RS02140at 431.756 kb on - strand, within ABID97_RS02140at 432.131 kb on - strandat 432.270 kb on - strand, within ABID97_RS02145at 432.293 kb on + strand, within ABID97_RS02145at 432.384 kb on - strand, within ABID97_RS02145at 432.384 kb on - strand, within ABID97_RS02145

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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430,425 + +3.3
430,425 + +2.9
430,425 + +2.9
430,425 + +2.4
430,426 - +2.1
430,622 + ABID97_RS02130 0.38 +2.8
430,622 + ABID97_RS02130 0.38 +2.7
430,623 - ABID97_RS02130 0.38 +2.7
430,624 + ABID97_RS02130 0.38 +3.0
430,625 - ABID97_RS02130 0.38 +2.5
430,643 + ABID97_RS02130 0.42 +1.2
430,643 + ABID97_RS02130 0.42 +2.2
430,643 + ABID97_RS02130 0.42 +2.6
430,643 + ABID97_RS02130 0.42 +2.7
430,643 + ABID97_RS02130 0.42 +2.7
430,644 - ABID97_RS02130 0.42 +2.2
430,644 - ABID97_RS02130 0.42 +2.6
430,644 - ABID97_RS02130 0.42 +2.7
430,644 - ABID97_RS02130 0.42 +2.8
430,644 - ABID97_RS02130 0.42 +2.9
430,644 - ABID97_RS02130 0.42 +2.6
430,644 - ABID97_RS02130 0.42 +2.3
430,644 - ABID97_RS02130 0.42 +2.9
430,647 + ABID97_RS02130 0.43 +3.5
430,839 + ABID97_RS02130 0.85 +2.9
430,840 - ABID97_RS02130 0.85 +2.6
430,840 - ABID97_RS02130 0.85 +2.8
430,840 - ABID97_RS02130 0.85 +1.8
430,852 + ABID97_RS02130 0.87 +3.0
431,165 + ABID97_RS02135 0.45 +3.0
431,165 + ABID97_RS02135 0.45 +3.1
431,236 + ABID97_RS02135 0.57 +3.0
431,236 + ABID97_RS02135 0.57 +2.9
431,237 - ABID97_RS02135 0.57 +3.5
431,281 + ABID97_RS02135 0.65 +2.8
431,479 + -1.3
431,480 - +0.1
431,545 + +2.0
431,545 + +3.4
431,546 - +3.5
431,546 - +3.7
431,550 - +1.8
431,592 + ABID97_RS02140 0.12 +3.4
431,592 + ABID97_RS02140 0.12 +3.6
431,592 + ABID97_RS02140 0.12 +3.2
431,593 - ABID97_RS02140 0.12 +3.8
431,593 - ABID97_RS02140 0.12 +4.1
431,593 - ABID97_RS02140 0.12 +3.5
431,755 + ABID97_RS02140 0.40 +3.5
431,755 + ABID97_RS02140 0.40 +3.6
431,756 - ABID97_RS02140 0.40 +3.6
431,756 - ABID97_RS02140 0.40 +3.4
432,131 - -0.2
432,270 - ABID97_RS02145 0.13 +3.4
432,293 + ABID97_RS02145 0.15 +3.3
432,384 - ABID97_RS02145 0.23 +3.5
432,384 - ABID97_RS02145 0.23 +3.4

Or see this region's nucleotide sequence