Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS22875 and RPSI07_RS22880 are separated by 1 nucleotides RPSI07_RS22880 and RPSI07_RS22885 are separated by 22 nucleotides RPSI07_RS22885 and RPSI07_RS22890 are separated by 22 nucleotides RPSI07_RS22890 and RPSI07_RS22895 overlap by 1 nucleotides
RPSI07_RS22875: RPSI07_RS22875 - glyoxylate/hydroxypyruvate reductase A, at 3,277,574 to 3,278,515
_RS22875
RPSI07_RS22880: RPSI07_RS22880 - hydroxymethylglutaryl-CoA lyase, at 3,278,517 to 3,279,446
_RS22880
RPSI07_RS22885: RPSI07_RS22885 - YbaK/EbsC family protein, at 3,279,469 to 3,279,972
_RS22885
RPSI07_RS22890: RPSI07_RS22890 - DUF1289 domain-containing protein, at 3,279,995 to 3,280,261
_RS22890
RPSI07_RS22895: RPSI07_RS22895 - MBL fold metallo-hydrolase, at 3,280,261 to 3,281,217
_RS22895
Position (kb) 3278
3279
3280 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3277.533 kb on + strand at 3277.534 kb on - strand at 3277.534 kb on - strand at 3277.547 kb on + strand at 3277.549 kb on + strand at 3277.550 kb on - strand at 3277.550 kb on - strand at 3277.589 kb on + strand at 3277.589 kb on + strand at 3277.589 kb on + strand at 3277.589 kb on + strand at 3277.590 kb on - strand at 3277.590 kb on - strand at 3277.590 kb on - strand at 3277.590 kb on - strand at 3277.695 kb on - strand, within RPSI07_RS22875 at 3277.880 kb on + strand, within RPSI07_RS22875 at 3277.880 kb on + strand, within RPSI07_RS22875 at 3277.880 kb on + strand, within RPSI07_RS22875 at 3277.880 kb on + strand, within RPSI07_RS22875 at 3277.881 kb on - strand, within RPSI07_RS22875 at 3277.881 kb on - strand, within RPSI07_RS22875 at 3277.925 kb on + strand, within RPSI07_RS22875 at 3277.926 kb on - strand, within RPSI07_RS22875 at 3278.026 kb on + strand, within RPSI07_RS22875 at 3278.237 kb on + strand, within RPSI07_RS22875 at 3278.238 kb on - strand, within RPSI07_RS22875 at 3278.331 kb on + strand, within RPSI07_RS22875 at 3278.332 kb on - strand, within RPSI07_RS22875 at 3278.332 kb on - strand, within RPSI07_RS22875 at 3278.543 kb on - strand at 3278.745 kb on + strand, within RPSI07_RS22880 at 3279.151 kb on - strand, within RPSI07_RS22880 at 3279.285 kb on + strand, within RPSI07_RS22880 at 3279.285 kb on + strand, within RPSI07_RS22880 at 3279.285 kb on + strand, within RPSI07_RS22880 at 3279.286 kb on - strand, within RPSI07_RS22880 at 3280.093 kb on + strand, within RPSI07_RS22890 at 3280.093 kb on + strand, within RPSI07_RS22890 at 3280.094 kb on - strand, within RPSI07_RS22890 at 3280.391 kb on - strand, within RPSI07_RS22895 at 3280.391 kb on - strand, within RPSI07_RS22895
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days remove 3,277,533 + +2.0 3,277,534 - -0.4 3,277,534 - +0.6 3,277,547 + -0.9 3,277,549 + +0.6 3,277,550 - +0.6 3,277,550 - +1.0 3,277,589 + -1.1 3,277,589 + -0.1 3,277,589 + -0.2 3,277,589 + +0.4 3,277,590 - +1.1 3,277,590 - -0.5 3,277,590 - -1.3 3,277,590 - -0.9 3,277,695 - RPSI07_RS22875 0.13 +0.3 3,277,880 + RPSI07_RS22875 0.32 +0.3 3,277,880 + RPSI07_RS22875 0.32 +0.1 3,277,880 + RPSI07_RS22875 0.32 -1.1 3,277,880 + RPSI07_RS22875 0.32 -0.5 3,277,881 - RPSI07_RS22875 0.33 -0.6 3,277,881 - RPSI07_RS22875 0.33 +0.2 3,277,925 + RPSI07_RS22875 0.37 -1.9 3,277,926 - RPSI07_RS22875 0.37 +0.1 3,278,026 + RPSI07_RS22875 0.48 -0.2 3,278,237 + RPSI07_RS22875 0.70 -0.6 3,278,238 - RPSI07_RS22875 0.70 -1.1 3,278,331 + RPSI07_RS22875 0.80 -0.4 3,278,332 - RPSI07_RS22875 0.80 +0.6 3,278,332 - RPSI07_RS22875 0.80 -1.4 3,278,543 - +0.2 3,278,745 + RPSI07_RS22880 0.25 -0.9 3,279,151 - RPSI07_RS22880 0.68 -0.4 3,279,285 + RPSI07_RS22880 0.83 -1.9 3,279,285 + RPSI07_RS22880 0.83 -1.2 3,279,285 + RPSI07_RS22880 0.83 -1.4 3,279,286 - RPSI07_RS22880 0.83 +0.5 3,280,093 + RPSI07_RS22890 0.37 -3.1 3,280,093 + RPSI07_RS22890 0.37 +0.1 3,280,094 - RPSI07_RS22890 0.37 -0.8 3,280,391 - RPSI07_RS22895 0.14 -0.9 3,280,391 - RPSI07_RS22895 0.14 -0.2
Or see this region's nucleotide sequence