Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS16270

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRPSI07_RS16265 and RPSI07_RS16270 are separated by 187 nucleotidesRPSI07_RS16270 and RPSI07_RS16275 are separated by 273 nucleotides RPSI07_RS16265: RPSI07_RS16265 - ABC transporter permease, at 1,809,390 to 1,810,307 _RS16265 RPSI07_RS16270: RPSI07_RS16270 - hypothetical protein, at 1,810,495 to 1,811,484 _RS16270 RPSI07_RS16275: RPSI07_RS16275 - peptidyl-prolyl cis-trans isomerase, at 1,811,758 to 1,812,555 _RS16275 Position (kb) 1810 1811 1812Strain fitness (log2 ratio) -2 -1 0 1 2at 1809.709 kb on + strand, within RPSI07_RS16265at 1809.710 kb on - strand, within RPSI07_RS16265at 1809.917 kb on - strand, within RPSI07_RS16265at 1809.917 kb on - strand, within RPSI07_RS16265at 1810.013 kb on - strand, within RPSI07_RS16265at 1810.423 kb on + strandat 1810.424 kb on - strandat 1810.424 kb on - strandat 1810.477 kb on - strandat 1810.497 kb on - strandat 1810.680 kb on - strand, within RPSI07_RS16270at 1810.781 kb on + strand, within RPSI07_RS16270at 1810.782 kb on - strand, within RPSI07_RS16270at 1810.815 kb on - strand, within RPSI07_RS16270at 1810.967 kb on + strand, within RPSI07_RS16270at 1810.967 kb on + strand, within RPSI07_RS16270at 1810.967 kb on + strand, within RPSI07_RS16270at 1810.968 kb on - strand, within RPSI07_RS16270at 1810.968 kb on - strand, within RPSI07_RS16270at 1810.968 kb on - strand, within RPSI07_RS16270at 1810.968 kb on - strand, within RPSI07_RS16270at 1811.123 kb on + strand, within RPSI07_RS16270at 1811.123 kb on + strand, within RPSI07_RS16270at 1811.124 kb on - strand, within RPSI07_RS16270at 1811.322 kb on + strand, within RPSI07_RS16270at 1811.617 kb on + strandat 1811.618 kb on - strandat 1811.618 kb on - strandat 1811.759 kb on + strandat 1811.896 kb on - strand, within RPSI07_RS16275at 1811.999 kb on + strand, within RPSI07_RS16275at 1811.999 kb on + strand, within RPSI07_RS16275at 1812.000 kb on - strand, within RPSI07_RS16275at 1812.000 kb on - strand, within RPSI07_RS16275at 1812.000 kb on - strand, within RPSI07_RS16275at 1812.000 kb on - strand, within RPSI07_RS16275at 1812.201 kb on - strand, within RPSI07_RS16275at 1812.245 kb on + strand, within RPSI07_RS16275at 1812.246 kb on - strand, within RPSI07_RS16275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
remove
1,809,709 + RPSI07_RS16265 0.35 +1.8
1,809,710 - RPSI07_RS16265 0.35 -0.5
1,809,917 - RPSI07_RS16265 0.57 -0.7
1,809,917 - RPSI07_RS16265 0.57 -0.3
1,810,013 - RPSI07_RS16265 0.68 -0.5
1,810,423 + +1.9
1,810,424 - -0.1
1,810,424 - +0.7
1,810,477 - -0.5
1,810,497 - -0.1
1,810,680 - RPSI07_RS16270 0.19 -0.3
1,810,781 + RPSI07_RS16270 0.29 -0.0
1,810,782 - RPSI07_RS16270 0.29 -0.8
1,810,815 - RPSI07_RS16270 0.32 -0.7
1,810,967 + RPSI07_RS16270 0.48 +0.6
1,810,967 + RPSI07_RS16270 0.48 -0.8
1,810,967 + RPSI07_RS16270 0.48 +2.2
1,810,968 - RPSI07_RS16270 0.48 +0.7
1,810,968 - RPSI07_RS16270 0.48 -0.9
1,810,968 - RPSI07_RS16270 0.48 -0.3
1,810,968 - RPSI07_RS16270 0.48 +0.1
1,811,123 + RPSI07_RS16270 0.63 -1.3
1,811,123 + RPSI07_RS16270 0.63 +0.9
1,811,124 - RPSI07_RS16270 0.64 -0.4
1,811,322 + RPSI07_RS16270 0.84 -1.0
1,811,617 + +0.9
1,811,618 - -1.3
1,811,618 - +0.1
1,811,759 + -1.1
1,811,896 - RPSI07_RS16275 0.17 +0.8
1,811,999 + RPSI07_RS16275 0.30 +0.3
1,811,999 + RPSI07_RS16275 0.30 -0.9
1,812,000 - RPSI07_RS16275 0.30 -2.1
1,812,000 - RPSI07_RS16275 0.30 -0.9
1,812,000 - RPSI07_RS16275 0.30 +0.4
1,812,000 - RPSI07_RS16275 0.30 +0.7
1,812,201 - RPSI07_RS16275 0.56 +0.3
1,812,245 + RPSI07_RS16275 0.61 +1.4
1,812,246 - RPSI07_RS16275 0.61 +0.4

Or see this region's nucleotide sequence