Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS03500 and RPSI07_RS03505 are separated by 61 nucleotides RPSI07_RS03505 and RPSI07_RS03510 are separated by 113 nucleotides
RPSI07_RS03500: RPSI07_RS03500 - endopolygalacturonase, at 951,236 to 953,278
_RS03500
RPSI07_RS03505: RPSI07_RS03505 - MFS transporter, at 953,340 to 954,647
_RS03505
RPSI07_RS03510: RPSI07_RS03510 - NUDIX domain-containing protein, at 954,761 to 955,798
_RS03510
Position (kb) 953
954
955 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 952.541 kb on + strand, within RPSI07_RS03500 at 952.541 kb on + strand, within RPSI07_RS03500 at 952.541 kb on + strand, within RPSI07_RS03500 at 952.541 kb on + strand, within RPSI07_RS03500 at 952.541 kb on + strand, within RPSI07_RS03500 at 952.541 kb on + strand, within RPSI07_RS03500 at 952.541 kb on + strand, within RPSI07_RS03500 at 952.542 kb on - strand, within RPSI07_RS03500 at 952.542 kb on - strand, within RPSI07_RS03500 at 952.542 kb on - strand, within RPSI07_RS03500 at 952.542 kb on - strand, within RPSI07_RS03500 at 952.542 kb on - strand, within RPSI07_RS03500 at 952.542 kb on - strand, within RPSI07_RS03500 at 952.643 kb on + strand, within RPSI07_RS03500 at 952.643 kb on + strand, within RPSI07_RS03500 at 952.643 kb on + strand, within RPSI07_RS03500 at 952.643 kb on + strand, within RPSI07_RS03500 at 952.643 kb on + strand, within RPSI07_RS03500 at 952.644 kb on - strand, within RPSI07_RS03500 at 952.644 kb on - strand, within RPSI07_RS03500 at 952.644 kb on - strand, within RPSI07_RS03500 at 952.676 kb on + strand, within RPSI07_RS03500 at 952.677 kb on - strand, within RPSI07_RS03500 at 952.677 kb on - strand, within RPSI07_RS03500 at 952.736 kb on + strand, within RPSI07_RS03500 at 952.749 kb on + strand, within RPSI07_RS03500 at 952.751 kb on + strand, within RPSI07_RS03500 at 952.752 kb on - strand, within RPSI07_RS03500 at 952.752 kb on - strand, within RPSI07_RS03500 at 952.922 kb on + strand, within RPSI07_RS03500 at 952.923 kb on - strand, within RPSI07_RS03500 at 953.072 kb on + strand, within RPSI07_RS03500 at 953.072 kb on + strand, within RPSI07_RS03500 at 953.072 kb on + strand, within RPSI07_RS03500 at 953.073 kb on - strand, within RPSI07_RS03500 at 953.073 kb on - strand, within RPSI07_RS03500 at 953.140 kb on - strand at 953.192 kb on + strand at 953.193 kb on - strand at 953.198 kb on + strand at 953.198 kb on + strand at 953.198 kb on + strand at 953.199 kb on - strand at 953.199 kb on - strand at 953.199 kb on - strand at 953.249 kb on + strand at 953.249 kb on + strand at 953.249 kb on + strand at 953.249 kb on + strand at 953.249 kb on + strand at 953.249 kb on + strand at 953.250 kb on - strand at 953.250 kb on - strand at 953.250 kb on - strand at 953.250 kb on - strand at 953.297 kb on + strand at 953.406 kb on + strand at 953.406 kb on + strand at 953.406 kb on + strand at 953.478 kb on + strand at 953.484 kb on + strand, within RPSI07_RS03505 at 953.485 kb on - strand, within RPSI07_RS03505 at 953.511 kb on + strand, within RPSI07_RS03505 at 953.511 kb on + strand, within RPSI07_RS03505 at 953.511 kb on + strand, within RPSI07_RS03505 at 953.511 kb on + strand, within RPSI07_RS03505 at 953.511 kb on + strand, within RPSI07_RS03505 at 953.512 kb on - strand, within RPSI07_RS03505 at 953.512 kb on - strand, within RPSI07_RS03505 at 953.512 kb on - strand, within RPSI07_RS03505 at 953.512 kb on - strand, within RPSI07_RS03505 at 953.512 kb on - strand, within RPSI07_RS03505 at 953.512 kb on - strand, within RPSI07_RS03505 at 953.538 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.940 kb on + strand, within RPSI07_RS03505 at 953.941 kb on - strand, within RPSI07_RS03505 at 953.941 kb on - strand, within RPSI07_RS03505 at 953.941 kb on - strand, within RPSI07_RS03505 at 953.941 kb on - strand, within RPSI07_RS03505 at 953.941 kb on - strand, within RPSI07_RS03505 at 953.941 kb on - strand, within RPSI07_RS03505 at 953.941 kb on - strand, within RPSI07_RS03505 at 953.941 kb on - strand, within RPSI07_RS03505 at 953.941 kb on - strand, within RPSI07_RS03505 at 953.941 kb on - strand, within RPSI07_RS03505 at 953.941 kb on - strand, within RPSI07_RS03505 at 953.941 kb on - strand, within RPSI07_RS03505 at 954.096 kb on + strand, within RPSI07_RS03505 at 954.096 kb on + strand, within RPSI07_RS03505 at 954.096 kb on + strand, within RPSI07_RS03505 at 954.096 kb on + strand, within RPSI07_RS03505 at 954.097 kb on - strand, within RPSI07_RS03505 at 954.097 kb on - strand, within RPSI07_RS03505 at 954.097 kb on - strand, within RPSI07_RS03505 at 954.097 kb on - strand, within RPSI07_RS03505 at 954.192 kb on + strand, within RPSI07_RS03505 at 954.193 kb on - strand, within RPSI07_RS03505 at 954.193 kb on - strand, within RPSI07_RS03505 at 954.315 kb on + strand, within RPSI07_RS03505 at 954.316 kb on - strand, within RPSI07_RS03505 at 954.378 kb on + strand, within RPSI07_RS03505 at 954.379 kb on - strand, within RPSI07_RS03505 at 954.379 kb on - strand, within RPSI07_RS03505 at 954.379 kb on - strand, within RPSI07_RS03505 at 954.393 kb on + strand, within RPSI07_RS03505 at 954.395 kb on + strand, within RPSI07_RS03505 at 954.395 kb on + strand, within RPSI07_RS03505 at 954.396 kb on - strand, within RPSI07_RS03505 at 954.508 kb on - strand, within RPSI07_RS03505 at 954.508 kb on - strand, within RPSI07_RS03505 at 954.508 kb on - strand, within RPSI07_RS03505 at 954.703 kb on - strand at 954.772 kb on + strand at 954.773 kb on - strand at 954.773 kb on - strand at 954.773 kb on - strand at 955.016 kb on + strand, within RPSI07_RS03510 at 955.016 kb on + strand, within RPSI07_RS03510 at 955.016 kb on + strand, within RPSI07_RS03510 at 955.017 kb on - strand, within RPSI07_RS03510 at 955.017 kb on - strand, within RPSI07_RS03510 at 955.127 kb on + strand, within RPSI07_RS03510 at 955.128 kb on - strand, within RPSI07_RS03510 at 955.130 kb on + strand, within RPSI07_RS03510 at 955.130 kb on + strand, within RPSI07_RS03510 at 955.130 kb on + strand, within RPSI07_RS03510 at 955.131 kb on - strand, within RPSI07_RS03510 at 955.131 kb on - strand, within RPSI07_RS03510 at 955.131 kb on - strand, within RPSI07_RS03510 at 955.211 kb on + strand, within RPSI07_RS03510 at 955.211 kb on + strand, within RPSI07_RS03510 at 955.211 kb on + strand, within RPSI07_RS03510 at 955.212 kb on - strand, within RPSI07_RS03510 at 955.341 kb on - strand, within RPSI07_RS03510 at 955.389 kb on + strand, within RPSI07_RS03510 at 955.389 kb on + strand, within RPSI07_RS03510 at 955.389 kb on + strand, within RPSI07_RS03510 at 955.389 kb on + strand, within RPSI07_RS03510 at 955.389 kb on + strand, within RPSI07_RS03510 at 955.390 kb on - strand, within RPSI07_RS03510 at 955.390 kb on - strand, within RPSI07_RS03510 at 955.390 kb on - strand, within RPSI07_RS03510
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days remove 952,541 + RPSI07_RS03500 0.64 -1.5 952,541 + RPSI07_RS03500 0.64 +1.4 952,541 + RPSI07_RS03500 0.64 -1.6 952,541 + RPSI07_RS03500 0.64 -0.3 952,541 + RPSI07_RS03500 0.64 +2.2 952,541 + RPSI07_RS03500 0.64 +0.7 952,541 + RPSI07_RS03500 0.64 +0.3 952,542 - RPSI07_RS03500 0.64 +2.3 952,542 - RPSI07_RS03500 0.64 +1.7 952,542 - RPSI07_RS03500 0.64 -1.9 952,542 - RPSI07_RS03500 0.64 -1.2 952,542 - RPSI07_RS03500 0.64 +1.5 952,542 - RPSI07_RS03500 0.64 -1.3 952,643 + RPSI07_RS03500 0.69 -0.7 952,643 + RPSI07_RS03500 0.69 +0.7 952,643 + RPSI07_RS03500 0.69 -0.8 952,643 + RPSI07_RS03500 0.69 -0.5 952,643 + RPSI07_RS03500 0.69 +0.4 952,644 - RPSI07_RS03500 0.69 -0.4 952,644 - RPSI07_RS03500 0.69 +0.1 952,644 - RPSI07_RS03500 0.69 -0.8 952,676 + RPSI07_RS03500 0.70 -0.9 952,677 - RPSI07_RS03500 0.71 -0.1 952,677 - RPSI07_RS03500 0.71 -0.8 952,736 + RPSI07_RS03500 0.73 -0.6 952,749 + RPSI07_RS03500 0.74 -0.8 952,751 + RPSI07_RS03500 0.74 +0.1 952,752 - RPSI07_RS03500 0.74 +0.5 952,752 - RPSI07_RS03500 0.74 +3.7 952,922 + RPSI07_RS03500 0.83 +0.8 952,923 - RPSI07_RS03500 0.83 -1.1 953,072 + RPSI07_RS03500 0.90 -1.0 953,072 + RPSI07_RS03500 0.90 +0.2 953,072 + RPSI07_RS03500 0.90 -1.1 953,073 - RPSI07_RS03500 0.90 -0.5 953,073 - RPSI07_RS03500 0.90 -0.4 953,140 - +0.1 953,192 + -0.1 953,193 - -0.0 953,198 + +1.5 953,198 + +0.0 953,198 + +0.7 953,199 - -0.4 953,199 - -0.3 953,199 - -0.8 953,249 + -0.7 953,249 + +2.3 953,249 + -0.2 953,249 + -0.9 953,249 + +0.4 953,249 + +0.9 953,250 - -0.9 953,250 - +0.7 953,250 - +0.3 953,250 - +0.5 953,297 + +0.4 953,406 + +0.6 953,406 + +2.7 953,406 + -1.4 953,478 + +0.3 953,484 + RPSI07_RS03505 0.11 -0.3 953,485 - RPSI07_RS03505 0.11 -0.3 953,511 + RPSI07_RS03505 0.13 -0.6 953,511 + RPSI07_RS03505 0.13 -0.3 953,511 + RPSI07_RS03505 0.13 -0.9 953,511 + RPSI07_RS03505 0.13 +0.5 953,511 + RPSI07_RS03505 0.13 -0.6 953,512 - RPSI07_RS03505 0.13 +0.7 953,512 - RPSI07_RS03505 0.13 +0.5 953,512 - RPSI07_RS03505 0.13 -0.2 953,512 - RPSI07_RS03505 0.13 -1.2 953,512 - RPSI07_RS03505 0.13 +0.1 953,512 - RPSI07_RS03505 0.13 -0.3 953,538 + RPSI07_RS03505 0.15 -0.4 953,940 + RPSI07_RS03505 0.46 +0.3 953,940 + RPSI07_RS03505 0.46 -0.3 953,940 + RPSI07_RS03505 0.46 -0.4 953,940 + RPSI07_RS03505 0.46 +0.5 953,940 + RPSI07_RS03505 0.46 -1.8 953,940 + RPSI07_RS03505 0.46 -0.8 953,940 + RPSI07_RS03505 0.46 -1.4 953,940 + RPSI07_RS03505 0.46 +1.7 953,940 + RPSI07_RS03505 0.46 -0.1 953,940 + RPSI07_RS03505 0.46 +0.5 953,940 + RPSI07_RS03505 0.46 +0.3 953,940 + RPSI07_RS03505 0.46 -0.4 953,940 + RPSI07_RS03505 0.46 -0.1 953,940 + RPSI07_RS03505 0.46 -0.8 953,940 + RPSI07_RS03505 0.46 +0.2 953,940 + RPSI07_RS03505 0.46 +1.5 953,940 + RPSI07_RS03505 0.46 -0.9 953,940 + RPSI07_RS03505 0.46 -0.4 953,940 + RPSI07_RS03505 0.46 -1.1 953,940 + RPSI07_RS03505 0.46 +0.3 953,940 + RPSI07_RS03505 0.46 -0.3 953,941 - RPSI07_RS03505 0.46 -1.6 953,941 - RPSI07_RS03505 0.46 -1.6 953,941 - RPSI07_RS03505 0.46 +2.3 953,941 - RPSI07_RS03505 0.46 -1.6 953,941 - RPSI07_RS03505 0.46 -1.6 953,941 - RPSI07_RS03505 0.46 +0.8 953,941 - RPSI07_RS03505 0.46 -1.1 953,941 - RPSI07_RS03505 0.46 -0.7 953,941 - RPSI07_RS03505 0.46 -0.6 953,941 - RPSI07_RS03505 0.46 -0.2 953,941 - RPSI07_RS03505 0.46 -1.0 953,941 - RPSI07_RS03505 0.46 -0.9 954,096 + RPSI07_RS03505 0.58 -0.5 954,096 + RPSI07_RS03505 0.58 -0.9 954,096 + RPSI07_RS03505 0.58 +0.5 954,096 + RPSI07_RS03505 0.58 +2.3 954,097 - RPSI07_RS03505 0.58 +2.5 954,097 - RPSI07_RS03505 0.58 +1.7 954,097 - RPSI07_RS03505 0.58 -1.4 954,097 - RPSI07_RS03505 0.58 +0.7 954,192 + RPSI07_RS03505 0.65 -0.4 954,193 - RPSI07_RS03505 0.65 -0.7 954,193 - RPSI07_RS03505 0.65 +0.5 954,315 + RPSI07_RS03505 0.75 +0.9 954,316 - RPSI07_RS03505 0.75 -0.9 954,378 + RPSI07_RS03505 0.79 +1.5 954,379 - RPSI07_RS03505 0.79 -0.5 954,379 - RPSI07_RS03505 0.79 -1.1 954,379 - RPSI07_RS03505 0.79 -0.5 954,393 + RPSI07_RS03505 0.81 -0.4 954,395 + RPSI07_RS03505 0.81 +0.5 954,395 + RPSI07_RS03505 0.81 -1.9 954,396 - RPSI07_RS03505 0.81 -1.2 954,508 - RPSI07_RS03505 0.89 -1.2 954,508 - RPSI07_RS03505 0.89 -0.4 954,508 - RPSI07_RS03505 0.89 +1.4 954,703 - +0.7 954,772 + -0.3 954,773 - +0.9 954,773 - -0.7 954,773 - +0.7 955,016 + RPSI07_RS03510 0.25 +0.7 955,016 + RPSI07_RS03510 0.25 -1.6 955,016 + RPSI07_RS03510 0.25 +0.1 955,017 - RPSI07_RS03510 0.25 -0.3 955,017 - RPSI07_RS03510 0.25 +1.7 955,127 + RPSI07_RS03510 0.35 +0.7 955,128 - RPSI07_RS03510 0.35 -2.4 955,130 + RPSI07_RS03510 0.36 -0.6 955,130 + RPSI07_RS03510 0.36 -1.9 955,130 + RPSI07_RS03510 0.36 -0.6 955,131 - RPSI07_RS03510 0.36 +1.3 955,131 - RPSI07_RS03510 0.36 +1.3 955,131 - RPSI07_RS03510 0.36 +1.1 955,211 + RPSI07_RS03510 0.43 +0.7 955,211 + RPSI07_RS03510 0.43 -1.2 955,211 + RPSI07_RS03510 0.43 -2.1 955,212 - RPSI07_RS03510 0.43 -0.0 955,341 - RPSI07_RS03510 0.56 -0.0 955,389 + RPSI07_RS03510 0.61 -0.5 955,389 + RPSI07_RS03510 0.61 -0.3 955,389 + RPSI07_RS03510 0.61 -1.2 955,389 + RPSI07_RS03510 0.61 -1.4 955,389 + RPSI07_RS03510 0.61 -1.5 955,390 - RPSI07_RS03510 0.61 -0.5 955,390 - RPSI07_RS03510 0.61 -0.3 955,390 - RPSI07_RS03510 0.61 -0.2
Or see this region's nucleotide sequence